Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03306 ATGGCGGCCGCGGCTTTTGCAATATCCGTCGCGTTGTTGGCTGCGGCGGCGGCGGTTGGTGGCGGATCGCCGGTGAGTCTGCCGCTGGAAAGAGCGTTTCCGACGAATCACGGAGTGGAGTTGAGTGAGCTGAGAGCTCGCGATGCGCTGAGGCATCGCAGAATGTTGCAGTCTTCAAACGGCGTCGTTGATTTCCCCGTCCAAGGCACCTACGATCCCTTCCAAGTCGGGCTTTACTTTACAAAGGTACAGTTGGGTACTCCTCCAGTGGAATTTTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTCAGTTGTAGCTCCTGCAGTGGTTGTCCTCAGACAAGTGGGCTTCAGATTCAGCTAAATTTTTTTGACCCTGGGAGATCATCAACATCTTCATTGATAGCTTGTTCTGACCAAAGGTGCAACAGTGGCATACAGTCATCAGATGCCAGCTGTTCCAGCCAGAACAACCAGTGCTCATACACTTTCCAGTATGGTGATGGAAGTGGAACATCAGGCTATTATGTGTCAGATATGATGCATCTGAACACTATTTTTGAGGGTTCTGTGACCACTAATTCTACAGCTCCTGTAGTTTTTGGTTGTAGCAACCAGCAGAGTGGGGACTTGACAAAGTCTGATAGAGCAGTTGATGGAATATTTGGATTTGGGCAACAGGAAATGTCTGTGATCTCTCAGCTATCCTCACAGGGGATAGCTCCAAGAGTATTCTCTCATTGTCTGAAAGGAGATAGCAGTGGAGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATTGTTTACACCTCACTTGTTCCAGCACAGCCTCATTACAATTTAAATCTACAGAGCATCTCTGTCAATGGCCAAACCTTGCAAATTGATTCCTCAGTTTTTGCAACATCAAACAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCGTATCTTGCTGAAGAGGCTTATGACCCCTTTGTCAATGCGATCACAGCTACAATTCCACAATCTGTACGCACTGTTGTTTCCAGAGGAAATCAATGTTACTTACTCACCACTAGTGTCACTGACGTTTTCCCTCAAGTAAGTCTGAACTTTGCCGGTGGGGCATCTATGCTTTTGAGACCACAGGACTATCTGATACAGCAGAATTCTATTGGTGGTGCAGCAGTGTGGTGTATTGGTTTTCAAAAACTCCAGGGTCAAGGGGTAACAATTCTAGGAGATCTCGTATTAAAAGACAAAATTGTTGTTTATGATCTGGCTGGTCAACGCATTGGATGGGCTAACTTTGACTGTTCTTTGTCAGTGAATGTATCTGCAACAACTGGCACTGGCAGAAGTGAATTTGTGAATGCCGGAGAGATAGGTGGAAGCATTTCTTTACGCGATGGACTTAAGTTGAGAAAGAGAGGGATCTTGGCTTTCCTTGTGCATGTAACACTAATTTACTGCATTGGATTCTTATAG 1485 0.4599 MAAAAFAISVALLAAAAAVGGGSPVSLPLERAFPTNHGVELSELRARDALRHRRMLQSSNGVVDFPVQGTYDPFQVGLYFTKVQLGTPPVEFYVQIDTGSDVLWVSCSSCSGCPQTSGLQIQLNFFDPGRSSTSSLIACSDQRCNSGIQSSDASCSSQNNQCSYTFQYGDGSGTSGYYVSDMMHLNTIFEGSVTTNSTAPVVFGCSNQQSGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRVFSHCLKGDSSGGGILVLGEIVEPNIVYTSLVPAQPHYNLNLQSISVNGQTLQIDSSVFATSNNRGTIVDSGTTLAYLAEEAYDPFVNAITATIPQSVRTVVSRGNQCYLLTTSVTDVFPQVSLNFAGGASMLLRPQDYLIQQNSIGGAAVWCIGFQKLQGQGVTILGDLVLKDKIVVYDLAGQRIGWANFDCSLSVNVSATTGTGRSEFVNAGEIGGSISLRDGLKLRKRGILAFLVHVTLIYCIGFL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03306 494 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
Viun5g03306 494 PRINTS Pepsin (A1) aspartic protease family signature 410 425 IPR001461 GO:0004190|GO:0006508
Viun5g03306 494 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Viun5g03306 494 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Viun5g03306 494 SUPERFAMILY Acid proteases 74 441 IPR021109 -
Viun5g03306 494 CDD pepsin_A_like_plant 79 438 IPR034161 -
Viun5g03306 494 FunFam Aspartic proteinase-like protein 2 266 445 - -
Viun5g03306 494 Gene3D Acid Proteases 53 265 IPR021109 -
Viun5g03306 494 Pfam Xylanase inhibitor C-terminal 282 434 IPR032799 -
Viun5g03306 494 ProSiteProfiles Peptidase family A1 domain profile. 79 434 IPR033121 -
Viun5g03306 494 PANTHER ASPARTYL PROTEASES 21 432 IPR001461 GO:0004190|GO:0006508
Viun5g03306 494 FunFam Aspartic proteinase-like protein 2 62 265 - -
Viun5g03306 494 Gene3D Acid Proteases 266 445 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03306 Viun-Chr5 43509283 43513228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03306 53 439 Miscellaneous Gene Families AT1G44130 27.363 2.28e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03306 - - gmx:100791299 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03306 5 43509283 43513228 Viun5g03306 5 43509283 43513228 ECH
Viun5g03306 5 43509283 43513228 Viun11g01814 11 34183281 34187968 PCT