Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03131 ATGGCGTTTCAGCTTCACCCAAAGCTCAACCATCTTTTATGCTTATTCATCATTACCCTTTCGTTTGCCCACGCTCAAGCTACTACCTTTGGATACTGCGCTGATGTGAACTATTCTGTGAAAGTTTCTGGAGTTGAAATCACACCAGACCCTGTTGTGCGTGCCAGGCCTGTCACCTTTAAAATTTCTGCTGCTACTGATTTGTTGAATGCAGGTGAAGCTATTTATGGAGGAAAGTGGGAAATTGCAGTTTCATACTTCGGATTCGTTGTCCATAAAGAAATCCATGATTTTTGTGAGCAAGTATCTTGTCCTGTTGCTACTGGCAGTTTTGTGGTTGCTCACACCCAGATGTTGCCTGCATTTGCCCCACCGGGCACCTACACCGTGGAGATGACACTAAAAAACGAAAAGAACAAGCCATTAACTTGCATCACCTTCAATTTAAAAATCGGTTTGGGATCTTTAACAACTATCTAA 480 0.4271 MAFQLHPKLNHLLCLFIITLSFAHAQATTFGYCADVNYSVKVSGVEITPDPVVRARPVTFKISAATDLLNAGEAIYGGKWEIAVSYFGFVVHKEIHDFCEQVSCPVATGSFVVAHTQMLPAFAPPGTYTVEMTLKNEKNKPLTCITFNLKIGLGSLTTI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03131 159 PANTHER NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED 10 151 IPR039670 GO:0015918|GO:0032934
Viun5g03131 159 SUPERFAMILY E set domains 27 151 IPR014756 -
Viun5g03131 159 Gene3D - 28 152 - -
Viun5g03131 159 SMART pgtp_13 30 149 IPR003172 -
Viun5g03131 159 Pfam ML domain 28 151 IPR003172 -
Viun5g03131 159 FunFam Putative phosphatidylglycerol/phosphatidylinositol transfer protein isoform A 28 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03131 Viun-Chr5 42411012 42414159 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03131 - - gmx:100818265 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03131 5 42411012 42414159 Viun5g03131 5 42411012 42414159 ECH
Viun5g03131 5 42411012 42414159 Viun11g01647 11 32685489 32691582 PCT