Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03076 ATGGCGACTCTGGATTCCGACGTGACGATGGTTCCGGCCGGCGAACCCTCCAGCAGCGCCGGTCCTTCGTCTAGCAAGAAGCCCAAGCGATTCGAGATCAAGAAGTGGAATGCCGTTGCTCTATGGGCTTGGGATATCGTTGTGGACAATTGTGCTATCTGCAGGAACCATATCATGGATCTCTGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCGCTAGATAATAGCGAGTGGGAGTTTCAGAAATATGGTCACTAG 354 0.5198 MATLDSDVTMVPAGEPSSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03076 117 CDD mRING-H2-C3H2C2D_RBX1 49 110 - -
Viun5g03076 117 PANTHER RING BOX 30 116 - -
Viun5g03076 117 MobiDBLite consensus disorder prediction 1 29 - -
Viun5g03076 117 FunFam E3 ubiquitin-protein ligase RBX1 18 117 - -
Viun5g03076 117 Pfam RING-H2 zinc finger domain 49 107 IPR024766 GO:0008270
Viun5g03076 117 SUPERFAMILY RING/U-box 29 114 - -
Viun5g03076 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 117 IPR013083 -
Viun5g03076 117 ProSiteProfiles Zinc finger RING-type profile. 62 107 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03076 Viun-Chr5 41851571 41854166 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03076 K03868 - gmx:100526919 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03076 5 41851571 41854166 Viun11g01566 11 32029271 32031740 PCT