Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02786 ATGTGGAGAGATCCGGGAGTTTCAGCTGATTCTTTCTATGAAATCCGCCCGGAATGTACTGATGTTCCCATTTCTCGATTTAAAATCAAGGCTGGTAAAACACTAAGTGCAAGAAAGTGGCATGCTGCATTTACTCAAGAAGGGTATCTAGATATAGGCAAGACTCTAAGCCGAATCTACCGTGGGGGAGTCCATCCATCTATTAGGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTGAAGAAAGAGAACAGATAAGACACCACAGAAGAATGCAATATGCTACACTTAAAGAAGAATGCCGCCAATTGTTTCCTCTTATTGGAAGTGGTAGATTTGTCACAGCACCTGTTGTTACTGAAGATGGTATGCCAATTCAAGATCCATTGGTTCTGAAAGAAACAAATGCAGCCAAGGGATTGGCTGTACATCATCAAGATAATAATAATTCAAGTAGGATTGCTCCAAATAGTTTACAGAAGGTGACAGACAAGATAGTAGTCCAGTGGCTGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACCGATAGGTCATTAGTTTTTTATGAGAAACAAGAAAACCTGTCAAAACTATGGGATGTACTTGCTGTTTATGCTTGGGTAGATAAAGACGTTGGCTATGGTCAAGGAATGTGTGACCTATGCTCCCCTATGATAATTCTTCTTAATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTCTGATGCGCAGGCTTCGCGGCAATTTTAGATGCACCGAGAGCTCTGTTGGGGTGACAGCTCAACTAAATGAGTTGGCTTCAGTTACTCAAGTAATTGATCCAAAACTTCATAACCATTTAGAGCTTCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGAATGCTAATGGTTTTGTTTCGTCGAGAATTCTCCTTTTGTGATTCGTTGTATCTTTGGGAGATGATGTGGGCCTTGGAATATGATCCTGACTTGTTCTTGATGTATGAAATGCCTGAATCAGCTTCTGAAAAAGCTGTGGGCTCGAAAGGAAAATCAAAGTCAATACGTCAGTGTGGAAAGTATGAGAGAGAATTCTTGAAGAGTGGATCAAAGGATGCTTCTCAATCTCCTCTTCCTATATCTGTTTTCCTTGTTGCTAGTGTTTTGAAAGATAAAAGTACAAAACTACTCCAAGAAGCACGGGGTTTGGATGATGTTGTCAAGATTTTGAATGACATAACTGGGAATCTAGATGCTAAAAAAGCTTGCAATGGGGCTATGAAACTTCACAAGAAATATTTGAGAAAGGCCAAGAAACCCTAG 1329 0.4048 MWRDPGVSADSFYEIRPECTDVPISRFKIKAGKTLSARKWHAAFTQEGYLDIGKTLSRIYRGGVHPSIRGEVWEFLLGCYDPKSTFEEREQIRHHRRMQYATLKEECRQLFPLIGSGRFVTAPVVTEDGMPIQDPLVLKETNAAKGLAVHHQDNNNSSRIAPNSLQKVTDKIVVQWLLTLHQIGLDVVRTDRSLVFYEKQENLSKLWDVLAVYAWVDKDVGYGQGMCDLCSPMIILLNDEADAFWCFERLMRRLRGNFRCTESSVGVTAQLNELASVTQVIDPKLHNHLELLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFLMYEMPESASEKAVGSKGKSKSIRQCGKYEREFLKSGSKDASQSPLPISVFLVASVLKDKSTKLLQEARGLDDVVKILNDITGNLDAKKACNGAMKLHKKYLRKAKKP 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02786 442 Gene3D - 264 441 - -
Viun5g02786 442 SMART tbc_4 60 351 IPR000195 -
Viun5g02786 442 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 35 413 - -
Viun5g02786 442 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 266 435 IPR035969 -
Viun5g02786 442 FunFam TBC1 domain family member 15-like 160 258 - -
Viun5g02786 442 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 158 258 - -
Viun5g02786 442 Pfam Rab-GTPase-TBC domain 175 326 IPR000195 -
Viun5g02786 442 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 38 288 IPR035969 -
Viun5g02786 442 ProSiteProfiles TBC/rab GAP domain profile. 63 328 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02786 Viun-Chr5 39442768 39450832 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02786 - - gmx:100805808 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02786 5 39442768 39450832 Viun5g02786 5 39442768 39450832 ECH