Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02611 ATGGCTGGAGCCACAAGCTTTGGAACTGCATGTATTCTAAGAAGAGCTGCTCAGACTTTTGCAGTATCTCATTCTCATATCTTCAACAGCAATGCCACCTTCTCTTTCCAAACAAAATTTTCCTCTCATATTCTCTCCGTTTCTACTTGTTCAGCTTCAGGTGTAAGCCAAGCAGTACAAGCTTTAAAGGGAGAAGTTGACGTGCTAATCAAGGGAGTAGGAGAAAGAAGTGTAGCAAAAGAAGTAAAACATATTCTTGAGATGGCTAGACGAGCATCATCGAAGCGGGAGACTCTCCACACAGATTTTCTAACCCCTCCAGTGCTAAAGGAATCTATGCAAGTTTTGGAAAAATTAGCAGACGTGAAAGCAATTGCTCAAGGAGGTTATCCTCAGGCTGAACGCTGTCGGATATCTGTTGGACATCCGGAAGAACTGACTAGTGATCCAGATATTATTTCAGCATTAAGTATTAAAGGGAACTTCCAGTTTGAACCTTGCTCACATGGTGACTTCCTTGGCTCAGTTCTTGGTACAGGAATTGTCAGGGAGAAACTTGGGGATATTATATTGCAGGGAGAACAGGGTGCGCAGATAATTGTTGTGCCAGAACTGGTTGAATTTCTTATGTCAACCTTGGTTAAGGTTCGTAATGTTCCTGTAACTTGCACCAAGATACCATTAATTTCTCTTGATTATGAACCACCAAGAACAAAATCATTCAAAACTATAGAAGCATCGCTAAGAGTTGATGCACTTGCTAGTGCCGGATTTAAAATTTCACGCTCAAAGCTAGTTGACATGATCAGCAATGGTGATGTGCGTGTGAACTGGATCCCTGTTACTACCAAAGGAACCACACTGAAGAGTGGAGATATTGTATCAGTCAGTGGAAAGGGAAGATTAAAGATAGGTGAAATAAACTCTACAAAGAAAGGAAAATTTGCAGTGGAGCTCATTCGGTATTTGTAG 972 0.4126 MAGATSFGTACILRRAAQTFAVSHSHIFNSNATFSFQTKFSSHILSVSTCSASGVSQAVQALKGEVDVLIKGVGERSVAKEVKHILEMARRASSKRETLHTDFLTPPVLKESMQVLEKLADVKAIAQGGYPQAERCRISVGHPEELTSDPDIISALSIKGNFQFEPCSHGDFLGSVLGTGIVREKLGDIILQGEQGAQIIVVPELVEFLMSTLVKVRNVPVTCTKIPLISLDYEPPRTKSFKTIEASLRVDALASAGFKISRSKLVDMISNGDVRVNWIPVTTKGTTLKSGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02611 323 Pfam Putative RNA-binding domain in YlmH 153 228 IPR040591 -
Viun5g02611 323 Gene3D - 242 299 IPR036986 GO:0003723
Viun5g02611 323 SUPERFAMILY Alpha-L RNA-binding motif 107 311 - -
Viun5g02611 323 Gene3D - 75 141 - -
Viun5g02611 323 ProSiteProfiles S4 RNA-binding domain profile. 248 308 - -
Viun5g02611 323 Pfam S4 domain 252 294 IPR002942 GO:0003723
Viun5g02611 323 SMART s4_6 248 308 IPR002942 GO:0003723
Viun5g02611 323 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 78 292 - -
Viun5g02611 323 FunFam BnaA05g14690D protein 242 299 - -
Viun5g02611 323 CDD S4 249 303 - -
Viun5g02611 323 NCBIfam photosystem II S4 domain protein 78 321 IPR017506 -
Viun5g02611 323 Gene3D - 149 231 IPR012677 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02611 - - gmx:100793767 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02611 5 37427905 37432853 Viun5g02611 5 37427905 37432853 ECH