Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun5g01338 | ATGACGCTTCACTTCACTATGCACCAATTAATTCACTACTCATTCCATCGCACCACTCTTCCTTCTCTCTCTACCACAATGCCGGAGCCTCACTCCATCACCCCGCTACCGCCGGAAGAAACGGCGTCCGCCAGCTCTCACACGCCGCCGGCCCGGTCACGCGAGGCGGAGCGCGCGCGCGGCACTTCCAGCAGAGGCAACTGGAGTATCTGCGGTGGCTCCGCCGCCTCTTTTAGAGACGAAACGTGTTCCTGCTTCGCCGTGGTCTTCAGCTTTTGGTTATTCGTGTCGATGACTATGATACTGGGGGTTTATGGGTCCATGACGATCGTGCTTGGTCCAACATCTTCGACAGTTTTCCAACCAAGTTCTCTGTTCGTGAAATCTGTGAAGGTAGAAAATTTGATGGCAAACCATGGAGCCGGGGCCATTCTTTATGGTACATATGGGTATCCCCCACTTGATATCGTTAGCACTTGGGGCGAGACTCTTAATGTGTCTCTTCCCTCTGGCGCAGAAAAGGAATGGAAACTTTATCTAAACACAGGGAGTGCAATAAATATTTCGTATCACGTTAGTTCTACGAGCTCTTCTGTTTTCCTTATAGTTGCGCAGGGGACGGAGACCTTCACTCGGTGGCTGGAAAACCCAACAGAACCTAACACAACTCTGTCATGGAACGTGATTCATGGAAGTGGTATGATTACCCAAGAAATTTTCCAGTCATCAGGCTATTACGTGGCATTGGGTAATTTGGATGAGGATGTGAATGTGACATTAAAGCTGAGTGTAAGATCCTCTTTGCATAATACAACAAATGCTTACTACAGATGTGCTCTTATCAACAAACCATGCACTTTAGATATTTTCTTTCTTGAAGGAAGTGCAGCTGTTTTAGTTACTCCTGCTCCACAACAGAATGCATCCAATGAATGGTATATCAAACTGTCCTATGGACCAAGATGGGTAACCTATATTTTTGGCATTGGGGGATTGACTTTGCTTGTGTTTTGGTCCTTCAATTTATTGAACAAGGTTCAGTATGGTGATGAAGGTGGAGCAGGACACAGAAGTGGGGGAACAGAACCTGAGAGAGCAGCTCTGGTTTCTCAGAAAGATGATGATGTTTCAAGTTGGGGTTCATCATATGGTTCCTTGCCACAAGACGAGCAGGATCTTGACTTTCTTCCAGGTGATGGTCAAAGCAGTAACAACAGTACACGGCGTCTTTGCGCTATTTGCTTTGATGCTCCCAGGGACTGCTTCTTTCTTCCTTGTGGCCACTGTGTGGCTTGTTTTGCTTGTGGAACCAGGATAGCAGAGGCATCTGGTACTTGCCCTGTTTGTCGTAGGAACATGAAGAAGGTTAGGAAGATTTTCACTGTTTGA | 1389 | 0.4701 | MTLHFTMHQLIHYSFHRTTLPSLSTTMPEPHSITPLPPEETASASSHTPPARSREAERARGTSSRGNWSICGGSAASFRDETCSCFAVVFSFWLFVSMTMILGVYGSMTIVLGPTSSTVFQPSSLFVKSVKVENLMANHGAGAILYGTYGYPPLDIVSTWGETLNVSLPSGAEKEWKLYLNTGSAINISYHVSSTSSSVFLIVAQGTETFTRWLENPTEPNTTLSWNVIHGSGMITQEIFQSSGYYVALGNLDEDVNVTLKLSVRSSLHNTTNAYYRCALINKPCTLDIFFLEGSAAVLVTPAPQQNASNEWYIKLSYGPRWVTYIFGIGGLTLLVFWSFNLLNKVQYGDEGGAGHRSGGTEPERAALVSQKDDDVSSWGSSYGSLPQDEQDLDFLPGDGQSSNNSTRRLCAICFDAPRDCFFLPCGHCVACFACGTRIAEASGTCPVCRRNMKKVRKIFTV | 462 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun5g01338 | 462 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 389 | 461 | IPR013083 | - | |
| Viun5g01338 | 462 | FunFam | E3 ubiquitin-protein ligase APD2 | 399 | 461 | - | - | |
| Viun5g01338 | 462 | MobiDBLite | consensus disorder prediction | 353 | 390 | - | - | |
| Viun5g01338 | 462 | SUPERFAMILY | RING/U-box | 410 | 456 | - | - | |
| Viun5g01338 | 462 | MobiDBLite | consensus disorder prediction | 24 | 66 | - | - | |
| Viun5g01338 | 462 | Pfam | Zinc finger, C3HC4 type (RING finger) | 408 | 456 | - | - | |
| Viun5g01338 | 462 | PANTHER | OS05G0521000 PROTEIN | 74 | 462 | - | - | |
| Viun5g01338 | 462 | SMART | ring_2 | 411 | 449 | IPR001841 | - | |
| Viun5g01338 | 462 | MobiDBLite | consensus disorder prediction | 374 | 388 | - | - | |
| Viun5g01338 | 462 | Pfam | Domain of unknown function (DUF4793) | 234 | 337 | IPR032010 | - | |
| Viun5g01338 | 462 | Pfam | Domain of unknown function (DUF4792) | 142 | 210 | IPR032008 | - | |
| Viun5g01338 | 462 | ProSiteProfiles | Zinc finger RING-type profile. | 411 | 450 | IPR001841 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun5g01338 | - | - | gmx:100791057 | 643.269 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Viun5g01338 | 5 | 9991323 | 10002974 | Viun5g01338 | 5 | 9991323 | 10002974 | ECH |