Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00957 TTACTTTCTGAACTATCTTTCAGGTATGCTGTAGTGACTGGAGCAAACAAAGGGATTGGTTTTGGGGTGTGTAAGAAGTTAGCTTCAAATGGGGTTGTGGTTGTGCTAACAGCTAGAGATGAAGAGAGAGGTTTGAAAGCAGTTGAATCACTGAAAGAGTTTGGTCTCTCAGACCTTCTGGTTTTTCATCAGCTTGATGTGAATGACCCTGCTAGTGTTGCTACCTTAGCTCATTTCATCAAAACCAAATTTGGGAAACTTGATATCTTGGTGAATAATGCAGCTGTTACTGGGGGTAAATTATTAGATGGTGACGCTTTACTTAGAATGAGAAATGGTGAAAAAGTTGATTTGAGTGAAGTAGGGTATGCAACTTATGAGTTAGCTCAACAATGTGTAGAAACAAACTTCTATGGTGTGGAAAGGATAACAGAAGCTCTTATTCCCCTTCTACAGTTGTCTACTTCACCAAGAATTATCAATATTTCCTCAAGAGCAGGGTTCTTGAAGAACATACCTAATGAGTGGGCTAGAACAGTGTTCAGTGACATTGAAAACCTTACAAGAGAAAAAATAGATAGGGTACTGAAAGAGTTTCAGAAAGATTTGAAGGAGGGGTTCTTGGAAATCAAGGGTTGGCCAACTTTTGCTCCTGCTTATACAATGTCAAAAGCAGCTTTGAATGCTTACACAAGAATTATGGCCAAGAAAATTCCACATTTTCACATAAACTCTGTGTGCCCTGGCTTTGTCAAGACTGATATGAACAACAACACTGGACAATTGAGCATTGATGAAGGTTCTGAAACTCCTGTAATGTTGGCACTGTTGCCAAATAGTCTTCCTTCTGGTTGCTTCTTTTATCAGGGTGAAGTAATACCCTTTTGA 888 0.3919 LLSELSFRYAVVTGANKGIGFGVCKKLASNGVVVVLTARDEERGLKAVESLKEFGLSDLLVFHQLDVNDPASVATLAHFIKTKFGKLDILVNNAAVTGGKLLDGDALLRMRNGEKVDLSEVGYATYELAQQCVETNFYGVERITEALIPLLQLSTSPRIINISSRAGFLKNIPNEWARTVFSDIENLTREKIDRVLKEFQKDLKEGFLEIKGWPTFAPAYTMSKAALNAYTRIMAKKIPHFHINSVCPGFVKTDMNNNTGQLSIDEGSETPVMLALLPNSLPSGCFFYQGEVIPF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00957 295 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 220 239 IPR002347 -
Viun5g00957 295 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 IPR002347 -
Viun5g00957 295 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 165 IPR002347 -
Viun5g00957 295 FunFam (+)-neomenthol dehydrogenase 3 295 - -
Viun5g00957 295 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 8 292 - -
Viun5g00957 295 Pfam Enoyl-(Acyl carrier protein) reductase 211 260 - -
Viun5g00957 295 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 286 IPR036291 -
Viun5g00957 295 PRINTS Glucose/ribitol dehydrogenase family signature 239 256 IPR002347 -
Viun5g00957 295 PRINTS Glucose/ribitol dehydrogenase family signature 9 26 IPR002347 -
Viun5g00957 295 PRINTS Glucose/ribitol dehydrogenase family signature 220 239 IPR002347 -
Viun5g00957 295 PRINTS Glucose/ribitol dehydrogenase family signature 151 167 IPR002347 -
Viun5g00957 295 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Viun5g00957 295 Gene3D - 3 295 - -
Viun5g00957 295 CDD carb_red_PTCR-like_SDR_c 8 295 IPR045313 GO:0016616
Viun5g00957 295 Pfam short chain dehydrogenase 9 170 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00957 Viun-Chr5 6087165 6088699 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00957 11 261 Acyl Lipid Metabolism Gene Families AT1G24360 22.835 6.21e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00957 K15095 - gmx:100789626 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00957 5 6087165 6088699 Viun5g00957 5 6087165 6088699 ECH
Viun5g00957 5 6087165 6088699 Viun10g01843 10 33390410 33395267 PCT