Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00891 ATGGCTCTGGGTGGTTTGGTTTCCAACACAAACTTCACTTCTTTCATTGGACCAGGAAATTTATATCATTTGGGAAAGGATCTATCACCTCAAAGAAGGGACATTTCTTGTGCATTTGTTGCACGTTATGGTGGCCAGATTGCAAAGGATCATTTCTCAAGATGCTGGCTTGGGATGCGTTTTCATGCTAGAGAGTCTTTGAATGAGAAAGTTTCAAAACTAATACCAACATTTGAAGATGAAGTGCAGCGTTGTTCTTCAATATCACAGAGACCTATTCACTGCATGAACATGAAACTAAACGCCAGCAGAAGATGTCAATGCTACCTGTCTTCAGATCTCTGTAGCTGTAGCCTTATTCAACAAAGAGCAGTATATGGACTAAGTTTTAACAAACTTGGTAAGGCTAATCCGGCTTGTGTTCATTACAAGTCTGAGGATTATGATATTACAGAATCAGAGGTGAATCCTCTTGCATCAGCTGAAGGAACAGGTGAAGCCATTCTCTTCGAAGGGAATGTTCCACAAGTATCTTCTTGGTGGCAGAAGTTTCCTAAGCGTTGGGTTATTGTATTGCTATGTTTTTCAGCATTTCTGCTGTGCAACATGGACCGTGTGAATATGAGCATAGCAATACTTCCAATGTCGCAAGAATTTAAGTGGAACAGTGCAACAGTTGGCCTCATTCAGTCATCTTTTTTCTGGGGCTACCTTCTTACCCAGATCCTTGGTGGCATATGGGCAGACAAACTTGGTGGGAAACTAGTGCTAGGTTTCGGAGTTGTCTGGTGGTCAATGGCAACAATTTTAACACCTATTGCTGCAAGAATTGGGCTCCCTTGTTTGCTTATTATGCGTGCATTTATGGGGATCGGTGAGGGTGTTGCCATGCCTGCTATGAATAATATGCTTTCCAAGTGGATTCCAGTTTCAGAGAGAAGCAGATCACTTGCCCTAGTATATAGTGGCATGTACCTTGGTTCAGTGGTTGGCTTGGCATTCTCACCATTACTAATCCAAAAATTTGGGTGGCCATCAGTTTTTTACTCTTTCGGATCCCTTGGAAGTATCTGGTTTACCTTGTGGTTAAGAAAGGCATATAGCTCCCCAAAAGATGACCCAGATGTTGGCGTAGAGGAGAAAAGGCTCATACTAGAAGGCAATGTATCAAATGCACCTGTTTCTTCCATTCCTTGGAAATTGATTTTATCAAAAGCACCGGTTTGGGCTCTTATAATCTCTCACTTCTGTCACAATTGGGGGACTTTTATTCTTCTGACCTGGATGCCTACTTATTATAATCAGGTTCTGAAGTTCAACCTCACTGAATCTGGGCTCTTATGTGTTCTTCCATGGTTAACCATGGCTGCTTTTGCAAATATTGGTGGGTGGATTGCTGACACACTTGTGAGAAAAGGCCTCTCCATAACAACTGTTCGAAAGATCATGCAATCAATAGGGTTTCTGGGTCCTGCCTTTTTTCTTTCTCAGCTGAGCCATGTCAGAACACCTGCCATGGCTGTACTATGCATGGCGTGTAGTCAGGGATCTGATGCATTCTCACAATCTGGTCTCTATTCCAATCACCAAGACATTGGACCCCGCTATGCTGGTGTATTGCTTGGACTATCAAACACAGCAGGAGTGCTTGCTGGTGTATTTGGTACAGCTGCAACTGGATTAATACTCCAGCGAGGTTCTTGGAATGATGTTTTTAAGGTTGCTGTTGCTTTGTACATAATAGGCACATTGGTGTGGAATATCTTTTCTACCGGAGAGAAAGTTCTTGACTGA 1794 0.4264 MALGGLVSNTNFTSFIGPGNLYHLGKDLSPQRRDISCAFVARYGGQIAKDHFSRCWLGMRFHARESLNEKVSKLIPTFEDEVQRCSSISQRPIHCMNMKLNASRRCQCYLSSDLCSCSLIQQRAVYGLSFNKLGKANPACVHYKSEDYDITESEVNPLASAEGTGEAILFEGNVPQVSSWWQKFPKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSQEFKWNSATVGLIQSSFFWGYLLTQILGGIWADKLGGKLVLGFGVVWWSMATILTPIAARIGLPCLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVVGLAFSPLLIQKFGWPSVFYSFGSLGSIWFTLWLRKAYSSPKDDPDVGVEEKRLILEGNVSNAPVSSIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAAFANIGGWIADTLVRKGLSITTVRKIMQSIGFLGPAFFLSQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGLILQRGSWNDVFKVAVALYIIGTLVWNIFSTGEKVLD 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00891 597 FunFam ascorbate transporter, chloroplastic isoform X1 395 595 - -
Viun5g00891 597 CDD MFS_SLC17A9_like 191 590 IPR044777 -
Viun5g00891 597 Gene3D MFS general substrate transporter like domains 402 594 IPR036259 -
Viun5g00891 597 FunFam ascorbate transporter, chloroplastic isoform X2 185 374 - -
Viun5g00891 597 Pfam Major Facilitator Superfamily 194 555 IPR011701 GO:0022857|GO:0055085
Viun5g00891 597 Gene3D MFS general substrate transporter like domains 185 374 IPR036259 -
Viun5g00891 597 ProSiteProfiles Major facilitator superfamily (MFS) profile. 190 594 IPR020846 GO:0022857
Viun5g00891 597 SUPERFAMILY MFS general substrate transporter 176 589 IPR036259 -
Viun5g00891 597 PANTHER SOLUTE CARRIER FAMILY 17 179 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00891 Viun-Chr5 5564279 5570306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00891 1 597 Organic Solute Cotransporters AT4G00370 71.357 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00891 K08193 - gmx:100784401 1106.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00891 5 5564279 5570306 Viun5g00891 5 5564279 5570306 ECH
Viun5g00891 5 5564279 5570306 Viun10g01921 10 33921150 33927997 PCT