Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00741 ATGGCGGAAAATTCTTCAACCGAGCTCAACAAGTTTCTGTTTTTTTGTTTGTTGCTTATACAAGTTGCAGTTTCTGAAATTATATTTGAAGAACGCTTTGAGGATGGATGGCGAAATCGGTGGGTAAAATCAGACTGGAAAAGCAGTGAGGGTAAAGCAGGTTCTTTCAAGCACACAGCTGGGCAATGGCATGGTGATCCAGATGATAAAGGTATTCAAACATCCAGTGATGCCAAACATTTTGCCATCTCTGCTAAAATACCAGAATTCACCAACAAAAACAGAACATTGGTCCTTCAGTATTCTGTAAGATTTGAGCAAGAGATTGAGTGTGGCGGAGGTTACATCAAGCTTCTCTCTGGATTTGTTAATCAAAAGAAGTTTGGTGGGGATACACCTTATATTTTAATGTTTGGACCAGATTTATGTGGCACTGATACAAAGAAACTCCATGTGATACTCTCCTACCACGGTCAAAACTACCCCATAAAGAAGGACCTGCAGTGTGAAACTGACAAGTTAACTCATTTCTACACATTCATTCTGAGGCCAGATGCCACATACAGTGTCCTGGTTGATAATAGAGAGAGAGATTCTGGAAGCATGTATACAGATTGGGATATTCTTCCTCCAAGAAAAATCAAAGATGTCAAGGCCAAAAAGCCTGCAGACTGGGAAGAAAAAGAATACATTGAAGACCCTGATGATTTCAAACCTGAGGGATATGATTCAATCCCAAGACAAATTCCTGACCCAAATGCTAAAGAGCCTGAAAACTGGGATGAAGAAGCAGATGGGAAATGGAAACCACCACAGATACCGAATCCAGCATACAAAGGACCATGGAAAAGAAAGAAAATCAAGAACCCTAACTACAAAGGGAAATGGAAAACTCCATGGATAGATAATCCAGAGTTTATAGATGACCCAGATCTCTATGTGCTTAAGCCTATCCAGTATGTGGGAATTGAAGTATGGCAGGTTAAAGGAGGTTCAGTTTTTGACAACGTTTTGATATGTGATGATCCTGATTATGCAAAACAAGTTGTTGAGGAAGTGTTTGCCAACAGGGAGATTGAAAAGGAAGGTTTTGAGGAAGCAGAGAAAGTGAGAAAAGCCAGAGAAGAGGAGGAGGCTCAAAGAGCAAGAGAAGAAGGTGAAAGGCGTAGAAAAGAGAGAGGTCATGATCGTAGATACCGGGACAGATACAGAGACAGATACAGAAGGCATCGCCATTACGACGATTATCATGACGAGCTTTGA 1263 0.4093 MAENSSTELNKFLFFCLLLIQVAVSEIIFEERFEDGWRNRWVKSDWKSSEGKAGSFKHTAGQWHGDPDDKGIQTSSDAKHFAISAKIPEFTNKNRTLVLQYSVRFEQEIECGGGYIKLLSGFVNQKKFGGDTPYILMFGPDLCGTDTKKLHVILSYHGQNYPIKKDLQCETDKLTHFYTFILRPDATYSVLVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWEEKEYIEDPDDFKPEGYDSIPRQIPDPNAKEPENWDEEADGKWKPPQIPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFIDDPDLYVLKPIQYVGIEVWQVKGGSVFDNVLICDDPDYAKQVVEEVFANREIEKEGFEEAEKVRKAREEEEAQRAREEGERRRKERGHDRRYRDRYRDRYRRHRHYDDYHDEL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00741 420 FunFam Calreticulin 211 312 - -
Viun5g00741 420 MobiDBLite consensus disorder prediction 365 397 - -
Viun5g00741 420 MobiDBLite consensus disorder prediction 49 68 - -
Viun5g00741 420 MobiDBLite consensus disorder prediction 254 268 - -
Viun5g00741 420 PIRSF Calreticulin 6 416 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Viun5g00741 420 Coils Coil 365 394 - -
Viun5g00741 420 MobiDBLite consensus disorder prediction 245 281 - -
Viun5g00741 420 PANTHER CALRETICULIN AND CALNEXIN 12 385 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Viun5g00741 420 SUPERFAMILY P-domain of calnexin/calreticulin 207 322 IPR009033 GO:0005509|GO:0005515
Viun5g00741 420 Gene3D - 26 385 - -
Viun5g00741 420 ProSitePatterns Calreticulin family signature 2. 136 144 IPR018124 GO:0005509
Viun5g00741 420 PRINTS Calreticulin signature 132 148 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Viun5g00741 420 PRINTS Calreticulin signature 106 124 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Viun5g00741 420 PRINTS Calreticulin signature 221 234 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Viun5g00741 420 PRINTS Calreticulin signature 249 271 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Viun5g00741 420 PRINTS Calreticulin signature 287 306 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Viun5g00741 420 PRINTS Calreticulin signature 320 340 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Viun5g00741 420 FunFam Calreticulin 1b 26 210 - -
Viun5g00741 420 ProSitePatterns Calreticulin family signature 1. 104 119 IPR018124 GO:0005509
Viun5g00741 420 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 224 IPR013320 -
Viun5g00741 420 Gene3D Calreticulin/calnexin, P domain 211 312 IPR009033 GO:0005509|GO:0005515
Viun5g00741 420 Pfam Calreticulin family 30 264 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Viun5g00741 420 Pfam Calreticulin family 266 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00741 Viun-Chr5 4628743 4633013 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00741 12 342 Miscellaneous Gene Families AT5G61790 34.518 7.28e-59 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00741 K08057 - gmx:100801827 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00741 5 4628743 4633013 Viun5g00741 5 4628743 4633013 ECH