Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00739 ATGTTGGTGTTCTTCATTTGCGTATTGCTTTTCTTCATCTTTGTATACAAATTCCTCACTGCTTATGGCGATTTCACTTTGATGTCTAAGAAGCAACCTAAACGCGAAGAAATTGAAGACAAGGTTGTTTGGATTACTGGCGCTAGCCGTGGAATTGGGGAGATTTTGGCTAAACAGCTTGCAAGTTTAGGGGCCAAGCTTATAATCTCTGCAAGGAATGAAGTTGAGCTAAACCGAGTAAGGACACAACTGAAAGGTAAGCATGCACCTGATGAAGTCAAGATTTTACCATTGGATTTATCGTCTGGAGAGGATTCTCTAAGGATAGCTGTTGAGAAAGCAGAATCCTTTTTTCCGGATTCCGGTGTTGATTACATGATCCATAATGCAGCTTTTGAGCGTCCTAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAGGCTACATTTGATGTCAATGTTTTTGGGACAATAACTCTTACAAAGCTCTTGACACCTTTCATGTTAAAGAGGGGGCATGGTCATTTTGTGGTGATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTCTGCTTCCAAATATGCGCTCAATGGTTACTTTCATACCTTGCGTTCAGAGCTCTGTCAGAAAGGGATCCGAGTAACTGTGGTCTGTCCTGGTCCAATAGAAACGTCAAATAATGCTGGATCAAAGGTTCCATCTGAGAAGCGTGTGTCATCTGAAAAGTGTGTGGAGCTGACTATCATTGCTGCAACCCATGGCTTAAAGGAAGCTTGGATATCATATCAGCCTGTGCTTGCTGTCATGTATCTTGTTCAGTACATGCCATCTGTTGGTTATTGGCTCATGGACAAGGTTGGCAAAAATCGAGTAGAAGCTGCTGAAAAGAAGGGAAACACATATTCTTTGAGCTTACTGTTTGGAAAAAAGAAGGCCCCATGA 960 0.4229 MLVFFICVLLFFIFVYKFLTAYGDFTLMSKKQPKREEIEDKVVWITGASRGIGEILAKQLASLGAKLIISARNEVELNRVRTQLKGKHAPDEVKILPLDLSSGEDSLRIAVEKAESFFPDSGVDYMIHNAAFERPKTSILDVTEEGLKATFDVNVFGTITLTKLLTPFMLKRGHGHFVVMSSAAGKTPAPGQAVYSASKYALNGYFHTLRSELCQKGIRVTVVCPGPIETSNNAGSKVPSEKRVSSEKCVELTIIAATHGLKEAWISYQPVLAVMYLVQYMPSVGYWLMDKVGKNRVEAAEKKGNTYSLSLLFGKKKAP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00739 319 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 41 230 - -
Viun5g00739 319 PRINTS Glucose/ribitol dehydrogenase family signature 169 185 IPR002347 -
Viun5g00739 319 PRINTS Glucose/ribitol dehydrogenase family signature 42 59 IPR002347 -
Viun5g00739 319 PRINTS Glucose/ribitol dehydrogenase family signature 121 132 IPR002347 -
Viun5g00739 319 PRINTS Glucose/ribitol dehydrogenase family signature 216 233 IPR002347 -
Viun5g00739 319 PRINTS Glucose/ribitol dehydrogenase family signature 195 214 IPR002347 -
Viun5g00739 319 Pfam short chain dehydrogenase 41 234 IPR002347 -
Viun5g00739 319 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 182 210 IPR020904 GO:0016491
Viun5g00739 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 289 IPR036291 -
Viun5g00739 319 Gene3D - 23 298 - -
Viun5g00739 319 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 2 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00739 Viun-Chr5 4620713 4624979 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00739 37 226 Acyl Lipid Metabolism Gene Families AT3G55310 31.959 4.13e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00739 K11165 - gmx:100795991 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00739 5 4620713 4624979 Viun5g00739 5 4620713 4624979 ECH