Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00738 ATGGAGGTTGTTTCGCAGCCTCTTTGCACCATTCTAACCGCCACGCGCAAACGCTCTCTTCTCATTCCAAAACAAATTCCTAATCCTTCTAAACACTTCTCCTTCTTATCTTTTCGCTCCACCACTCTCTCTTCTTCTTCGCGTGTTTCTCCACCGTCTCTTCTGTTCGCCGCGCCGGAGAACCAGTTGAGTGTCGGTGAAGGAGAGAACACCGATGCAAGTGAATGGGCTCTGCAAGATTTTTACTCCCTGAGGAGGGATGTTGAAACTATGTTGCAACGTGTTGAAGAGATTAGAGAGTCTTCTGGTCTACAACTATTGGAGCAAGAACTTGCCAATTTGGAGGAGCAAGCAGCAGATAGCTCTTTCTGGGACAATCGGGCGACAGCTCAAAAGACTCTTTCGACATTGGCTGATGTGAAAGAGAAGATAAAATTACTCAATGATTTTAAAACACAGGTTGAGGATGCAGAAACAATAGTTAAGCTGACTGAGGAAATGGAATCCATTGATAGAGGACTTTTTGATGAGGCCGCCAATCTTATTAAAGAACTGAATAAATCACTAGATCGATATGAGCTGACTCAACTTCTCTCTGGTCCTTATGATAAAGAAGGTGCTGTTATCTCTATTACAGCAGGTGCTGGTGGTACTGATGCCCAGGATTGGGCAGACATGCTTCTTAGGATGTACATGAGATGGGGTGAGAAACAAAGATACAAGACCAGAGTGATTGAGAAATCCCCCGGAGAAGAAGCTGGAATAAAATCGGCCACTGTTGAAGTTGAAGGTCGTTATGCATATGGGTATTTGTCTGGGGAGAAAGGAACGCATCGCATTGTTCGTCAATCACCTTTTAACGCCAAAGGGCTTCGTCAGACAAGCTTTTCTGGTGTTGAGGTGATGCCTCTTCTTCCAGAGGAATCTATGGATGTTGAAATTCCCGAGGAGGACCTCGATATTAGTTTTTCAAGAGCAGGTGGAAAGGGAGGTCAGAATGTCAACAAGGTTGAAACTGCAGTTCGGATTACACACATTCCAACTGGTGTCACTGTTCGCTGCACAGAGGAGAGATCACAACTGGCGAATAAGATCAGAGCTTTAAGCCGTTTGAAAGCCAAGTTGTTGGTTATAGCTGAAGAGCAGCGCGCATCAGAGATTAAGCAGATTCGAGGGGACGCAGTCAAGGCTGAATGGGGACAACAAATACGGAACTATGTATTCCATCCATACAAGCTAGTTAAAGATGTAAGAACAGGGCATGAAACCACAGATGTCATCTCTGTAATGGATGGGGAGTTGGATCCCTTCATCAAATCATACCTCAAATACAAGTTAAACATGTCACTGTCCTCAACTGGGGTTAACTGA 1371 0.4464 MEVVSQPLCTILTATRKRSLLIPKQIPNPSKHFSFLSFRSTTLSSSSRVSPPSLLFAAPENQLSVGEGENTDASEWALQDFYSLRRDVETMLQRVEEIRESSGLQLLEQELANLEEQAADSSFWDNRATAQKTLSTLADVKEKIKLLNDFKTQVEDAETIVKLTEEMESIDRGLFDEAANLIKELNKSLDRYELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTRVIEKSPGEEAGIKSATVEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEEDLDISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIRALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETTDVISVMDGELDPFIKSYLKYKLNMSLSSTGVN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00738 456 Coils Coil 97 117 - -
Viun5g00738 456 SMART PCRF_a_2 162 274 IPR005139 GO:0006415
Viun5g00738 456 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 325 341 IPR000352 GO:0003747|GO:0006415
Viun5g00738 456 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 79 446 - -
Viun5g00738 456 SUPERFAMILY Release factor 107 446 IPR045853 -
Viun5g00738 456 Coils Coil 175 195 - -
Viun5g00738 456 Gene3D - 305 401 - -
Viun5g00738 456 Pfam PCRF domain 107 299 IPR005139 GO:0006415
Viun5g00738 456 Hamap Peptide chain release factor 2 [prfB]. 80 446 IPR004374 GO:0005737|GO:0006415|GO:0016149
Viun5g00738 456 Gene3D - 209 439 - -
Viun5g00738 456 Gene3D Release factor 86 202 - -
Viun5g00738 456 Pfam RF-1 domain 309 418 IPR000352 GO:0003747|GO:0006415
Viun5g00738 456 NCBIfam peptide chain release factor 2 89 443 IPR004374 GO:0005737|GO:0006415|GO:0016149
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00738 Viun-Chr5 4614722 4620456 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00738 K02836 - gmx:100775574 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00738 5 4614722 4620456 Viun5g00738 5 4614722 4620456 ECH