Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00590 ATGTATACTGACGGTTATACTGCTCTAGTTACAAACTTATCTTCAAGAGCAACAGAGAACGATGTACACAATTTTTTTGCTTATTGTGGACCAATTGAGCATGTTGAAATAATAAGATCTGATGAAAATGCATCTACTGCATATGTGACTTATCAGGATGCCTATGCCCTGGAAACTGCGCTATTGCTAAATGGATCAATGATATTGGACCAATGTATATTCATTTCACGCTATGAAGCTTACGTAAATGACTATGATAATTGGGGCAGTCATGTATCAAAGCCTGAAGACAGTATTACAATCTCACAAGATGATCGCATGGACAAGTTTGTTTCTTCCCCTGGAGAAGCACTAACTCTGGCTCAGGTGGTTGTCAAAACAATGGTGGCTAAGGGCTATGTGTTGGGAAAAGATGCATTTGTGATGGCAAAAGCTTTTGATGAATCTCATAATGTGTCGTCTACAGCATCATCAAAGGTTGTTGAACTCAGCAATAAAATTGGCTTGACTGATTCCATTAATTCAGGCATTGAAACTTTTAAATCTGTGGATGAGAAGTATCATGTCACAGACTTCACCAAATCAGCTGCAACAGTGACAGGGACAACAGCTATAGTTGTTGCATCAGTTACCGGTAAAGCTGCTGTGGCAGCTGGAAATGCTATAGCCAACAGTAGGTACTTTGCCAAAGGTGCTCTTTGGGTTTCAGATATTTTGACACGTGCCGCCAAAGCAGCTGCTGATTTGGGTCAGAGTGAAAAGAAATGA 768 0.4023 MYTDGYTALVTNLSSRATENDVHNFFAYCGPIEHVEIIRSDENASTAYVTYQDAYALETALLLNGSMILDQCIFISRYEAYVNDYDNWGSHVSKPEDSITISQDDRMDKFVSSPGEALTLAQVVVKTMVAKGYVLGKDAFVMAKAFDESHNVSSTASSKVVELSNKIGLTDSINSGIETFKSVDEKYHVTDFTKSAATVTGTTAIVVASVTGKAAVAAGNAIANSRYFAKGALWVSDILTRAAKAAADLGQSEKK 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00590 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Viun5g00590 255 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 7 254 - -
Viun5g00590 255 Gene3D - 2 82 IPR012677 -
Viun5g00590 255 SUPERFAMILY RNA-binding domain, RBD 4 79 IPR035979 GO:0003676
Viun5g00590 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 72 IPR000504 GO:0003723
Viun5g00590 255 SMART rrm1_1 7 76 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00590 Viun-Chr5 3580873 3584361 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00590 - - gmx:100784005 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00590 5 3580873 3584361 Viun5g00590 5 3580873 3584361 ECH