Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02364 ATGATAAACCTGCGTGACTTGGATATGAGGCATGTAAAAGATTTTACGTTTGTCCATGGCTACATTGAACCTGTAATGGTTATTTTACATGAACGTGAACTCACTTGGGCTGGGCGTGTCTCATGGAAGCATCATACTTGCATGATATCAGCACTTAGTATCAGTACAACCTTAAAGCAGCATCCACTTATTTGGTCAGCTGTTAATCTCCCCCATGATGCATACAAACTTCTTGCTGTGCCCTCACCAATAGGTGGTGTTCTTGTAATAGGTGCTAACACTGTTCATTATCACAGTCAGTCTGCTTCTTGTTCATTGGCCTTGAACAGCTATGCTGTTTCACCTGACAATAGTCAAGAGATGCCGAGATCAAGTTTTAACGTGGAGCTTGATTCTGCCAATGCAACTTGGTTGTTGAGCGATGTGGCCTTGCTGTCTACAAAAACTGGCGAACTGCTATTGCTTACACTTGTTTATGATGGAAGGGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTGTCATCTGGTATTACGACCATTGGGAATTGTCTGTTTTTTCTCGCCAGTCGGTTAGGGGATAGTATGTTGGTGCAATTTTCTTGTGGATCTGGTGGTTCAATGTTGTCATCCAATTTAAAAGAAGAGGTTGGTGATATTGAAGTGGATGCTCCATCAAAGAGATTGCGGAGGTCACCTTCTGATACTTTGCAAGACATGGTTAGTGGTGAAGAGCTCTCCTTGTATGGGTCTGCTCCAAATAGAACAGAATCAGCTCAGAAGTCCTTCTCGTTTGCTGTGAGGGATTCATTGATTAATGTTGGTCCTTTGAAAGATTTCTCATATGGTTTAAGAATAAACGCTGATGCAAATGCTACAGGGATAGCCAAACAGAGTAACTATGAATTGGTGTGCTGTTCTGGTCATGGAAAGAATGGTTCTTTGTGTGTTCTGCGGCAATCGATTCGTCCAGAAGTGATTACTGAGGTTGAACTTCCTGGTTGCAAAGGAATTTGGACTGTGTATCATAAGAGCACACGCTCTCATAATACCGATTCTTCTAAGCTGGCTGATGATGATGATGAGTATCATGCCTATCTTATTATTAGTTTGGAGGCTCGTACAATGGTACTAGAAACAGCCGATCTTCTGAGTGAGGTTACTGAAAGTGTGGACTATTATGTTCAAGGAAAAACACTTGCTGCGGGAAATTTATTTGGAAGGCGTCGAGTTATCCAAGTGTATGAACGTGGTGCTCGAATTCTAGATGGTTCTTTTATGACCCAAGATGTAACCTTTGGAGCTTCAAATTCAGAATCTGGTTCTGCTTCTGAGAGTGCTGTAGCACTTTCTGTTTCTATAGCTGATCCATTTGTCTTACTCAGAATGAGTGATGGAAGTGTTCGTCTTCTGATTGGAGATCCTATTACCTGCACAATTTCTGTCACTTCACCAGCTTCATTCGAGAGCACCAAGGGATCAGTTTCTTCATGCACACTGTACCATGATAAAGGACCTGAGCCTTGGCTGAGGAAGACTAGTACTGATGCGTGGCTTTCAACTGGTGTTGGTGAGGCTATTGATGGTACTGATGGTGCTGCTCAGGACCATGGGGATATTTATTGTGTAGTTTGTTTTGATAATGGCAACCTTGAAATATTTGATGTGCCCAATTTCAATTGTGTCTTTTCTGTGGAAAATTTCATGTCTGGAAAGAGCCATCTTGTTGATGCTCTGATGAAAGAAGTACTAAAAGATTCTAAAATGGGGGATAGAGATGGAGTGGTCAGCCAAGGGAGGAAGGAAAATGTACCAGATATGAAGGTTGAAGAGTTGGCTATACAGAGATGGTCTGGGCAACATAGCCGTCCATTTCTTTTTGGGATTTTGAGTGATGGAACTATTCTTTGTTACCATGCTTATCTTTATGAAAGTCCAGATGGTACTTCTAAAGTTGAGGATTCAGCATCAGCGGGAGGATCCGTTGGCCTTGGCACTACCAATGTTTCCAGGCTTAGAAATTTGAGATTTGTTCGTGTGCCCTTGGATGCATATGCTAGGGAGGAGACATCTAATGGATCACCTCGTCAACAAATTACTATTTTTAAGAATATTGGTAATTATCAAGGATTCTTCCTGTCTGGGTCAAGACCAGCTTGGGTCATGGTGTTGAGGGAACGACTTCGTGTTCATCCACAGCTATGTGATGGGTCTATTGTTGCTTTTACTGTACTTCACAACGTGAACTGCAATCATGGACTTATATATGTTACATCACAGGGTGTTTTGAAGATATGCCAGCTGCCTTCTGGTTCAAACTATGACAGCTACTGGCCTGTACAAAAAATTCCACTAAAAGCCACTCCACACCAAGTAACATATTTTGCTGAGAAGAATTTATATCCACTTATTGTCTCGTTTCCTGTTCTTAAACCACTAAATCAAGTTATTTCTTTGGTTGACCAAGATGTCAACCATCAGAGTGAGGGTCAGAATATGAATTCTGATGAGCAAAACCGCTTTTATCCTATTGATGAATTTGAGGTTCGAATTATGGAACCAGAAAAGTCTGGTGGCCCTTGGCAAACAAAAGCAACAATACCTATGCAAAGTTCTGAAAATGCCCTCACTGTGAGGATGGTTACCCTGCTGAATACAACCTCAAAAGAAAATGAAACACTTTTAGCCATTGGGACTGCTTATGTGCAAGGAGAGGATGTTGCTGCAAGAGGACGCATCCTCCTGTTTTCTTTGGGGAAAAATACTGATAATCCACAATCTCTGGTTTCAGAGGTGTATTCTAAGGAATTAAAAGGTGCTATATCTGCCTTGGCCTCACTTCAGGGCCATCTATTAATAGCGTCTGGTCCAAAAATTATTCTGCACAAGTGGAATGGCACTGAGTTGAATGGTATTGCATTTTTTGATGCACCACCATTACATGTTGTGAGCTTAAATATTGTAAAGAACTTCATCCTTATTGGCGACATCCATAAAAGCATATACTTTCTCAGTTGGAAAGAGCAGGGTGCTCAATTGAGTTTATTAGCCAAGGATTTTGCTTCTCTCGATTGTTTTGCGACAGAATTTTTGATTGATGGAAGTACTCTTAGTCTCATGGTTTCAGATGATAAAAAAAATATCCAGATTTTTTACTATGCGCCAAAGATGTCCGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAATTTCATGTTGGTGCTCATGTGACTAAATTCTTAAGATTGCAAATGCTATCCACTTCAGATAGAGCTGGTTCAGCTCCAGGCTCAGATAAAACCAATCGTTTTGCGTTATTATTTGGGACCCTGGATGGCAGTATTGGCTGCATTGCCCCGCTTGATGAAATCACATTTCGTAGACTGCAGTCTTTGCAGAGAAAGCTTGTTGATGCTGTAGCCCATGTTGCTGGCCTGAACCCCAGAGCTTTCAGACAATTTCAGTCAAATGGAAAGGCTCATAAGCCTGGCCCTGACAGTATAGTTGACTGCGAGCTGCTATGCCATTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTCATCAGGTTGGGACAACTCGATCACAAATTCTCTCAAATCTAAGTGATCTGTCTCTTGGAACAAGCTTCTTGTAA 3654 0.4149 MINLRDLDMRHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAVNLPHDAYKLLAVPSPIGGVLVIGANTVHYHSQSASCSLALNSYAVSPDNSQEMPRSSFNVELDSANATWLLSDVALLSTKTGELLLLTLVYDGRVVQRLDLSKSKASVLSSGITTIGNCLFFLASRLGDSMLVQFSCGSGGSMLSSNLKEEVGDIEVDAPSKRLRRSPSDTLQDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSHNTDSSKLADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDVTFGASNSESGSASESAVALSVSIADPFVLLRMSDGSVRLLIGDPITCTISVTSPASFESTKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVVCFDNGNLEIFDVPNFNCVFSVENFMSGKSHLVDALMKEVLKDSKMGDRDGVVSQGRKENVPDMKVEELAIQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSASAGGSVGLGTTNVSRLRNLRFVRVPLDAYAREETSNGSPRQQITIFKNIGNYQGFFLSGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDSYWPVQKIPLKATPHQVTYFAEKNLYPLIVSFPVLKPLNQVISLVDQDVNHQSEGQNMNSDEQNRFYPIDEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLLNTTSKENETLLAIGTAYVQGEDVAARGRILLFSLGKNTDNPQSLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWNGTELNGIAFFDAPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLSLLAKDFASLDCFATEFLIDGSTLSLMVSDDKKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRAGSAPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVAHVAGLNPRAFRQFQSNGKAHKPGPDSIVDCELLCHYEMLPLEEQLEIAHQVGTTRSQILSNLSDLSLGTSFL 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02364 1217 Gene3D - 277 324 IPR015943 GO:0005515
Viun4g02364 1217 Gene3D - 739 1124 IPR015943 GO:0005515
Viun4g02364 1217 Gene3D - 325 428 IPR015943 GO:0005515
Viun4g02364 1217 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 9 1203 - -
Viun4g02364 1217 FunFam cleavage and polyadenylation specificity factor subunit 1 739 1124 - -
Viun4g02364 1217 Pfam CPSF A subunit region 850 1182 IPR004871 GO:0003676|GO:0005634
Viun4g02364 1217 Gene3D - 7 276 IPR015943 GO:0005515
Viun4g02364 1217 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 12 466 IPR018846 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02364 Viun-Chr4 39091396 39106823 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02364 K14401 - gmx:100785543 2304.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02364 4 39091396 39106823 Viun4g02364 4 39091396 39106823 ECH