Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02358 ATGACCCACGCCCGAAAGCCCACCAAGCCCAACCACCAGCCCCACCAGGCCCACAACCCTTCATTCTCCACCACCGGCATGAAACTCATCGTCCCTCTCCAGGGCGTCGTCCAGGGCCGCGGTGGCCTCCTCCTCGGAACCCTCGTCCCCTGCGCCCTCTTCTACTTCCTCCAGCTCTACCTCAAACGACGCCGTTCCAACTCCTCCCCTCCCTCCCCCTCCTCCGAGCCCACCCTCCCCCGCACCTCCTCCCGCTCCAATTTGTCCACACGTGGCTCCATTTCCCGGGTCCGCCTCTCCAAGCTCGCCACGCAGATTTCCCGCCCCGACCACTCCCTCTACTACGTCGGCTTGGAGAGGGTTTCGCGAGATCCCTACCACGTCCTTCACAATCCCAATGGGATTATTCAGTTGGGATTGTCGGATAACACGCTGTGCTTCGATTTGATAGGGGAATGGGTGGCGCGGAACTTGGAGGGCACGATGGGTGGCGGTGTTGATTTGGGTATCAATGGGATTGCGCCGTATCAGACGTTTGATGGGGTGATGGAATTGAAAATGGCCCTGTCAGATTTTATGCATCAGGTGATGGGGGAATCAGTAAAATTTGACCCATATAATATGGTTCTAACAGCTGGAGCAACTCCTGCAATTGAGATATTGTCCTTCTGTTTGGCAGACCACGGGAATGCATTCCTTGTCCCTACACCATATTATCCAGGATTTGACAGGGATGTAAGATGGCGTCCAGGGGTAGACCTAATACCTGTTCATTGTCGCAGTACTGACAATTTCAATCTAAATATCACTGCTCTTGATCAAGCATTTAGTCAAGCAAGAAAACGAGGAGTCAAAATTCGTGGAATTCTAATTTCCAACCCTTCAAATCCCGTTGGCAATATTTTGACACAAGACATGCTATACAGTCTTCTGGACTTTGCTGAAGACAAAAACATTCATATCATTGTTGATGAAGTATTTGCAGGCTCCACGTACGGACGTGAGAAGTTCGTGAGTCTAGCTGAAGTTCTTCTTGATTCAGATATAGACAAGAGTCGGTTTCACATAGTATATGGCCTGTCAAAAGACCTCTCTCTTGCCGGATTTAGAGTTGGGGTTATATGTTCATTCAACGAAAGTGTTTTGGCTGCTGCCAAGAAGTTGACCAGATTTTCCACTATATCTGCTCCGACCCAGAGGTTAGTTACTTCAATGCTTTCAGATAAAAGATTTATTCGGGACTATTTAGAAATCAACCGAACAAGAATACGACAACTGCATGCTGTATTTGTGGATTGTTTAAGTAAACTAGGAATAAAGTGTGCCAAGAGCAGTGCTGGTATGTTCTGTTGGGCTGATATGAGTGGATTGATCCGACCATATAGTGAAAAAGGGGAAATTGAGTTGTGGGAGAAGTTTTTAAGTATTGCTAAGATCAATATAACTCCTGGATCAGCCTGCCATTGCATAGAACCAGGATGGTTTCGAATTTGTTTTACTACCATAACATTAGAGGAGGCCCCTCTGGTTATTGAACGAATTAGGAGAGTTGTTGAAAGTTGTAATTCTTCTAGTTGA 1578 0.4747 MTHARKPTKPNHQPHQAHNPSFSTTGMKLIVPLQGVVQGRGGLLLGTLVPCALFYFLQLYLKRRRSNSSPPSPSSEPTLPRTSSRSNLSTRGSISRVRLSKLATQISRPDHSLYYVGLERVSRDPYHVLHNPNGIIQLGLSDNTLCFDLIGEWVARNLEGTMGGGVDLGINGIAPYQTFDGVMELKMALSDFMHQVMGESVKFDPYNMVLTAGATPAIEILSFCLADHGNAFLVPTPYYPGFDRDVRWRPGVDLIPVHCRSTDNFNLNITALDQAFSQARKRGVKIRGILISNPSNPVGNILTQDMLYSLLDFAEDKNIHIIVDEVFAGSTYGREKFVSLAEVLLDSDIDKSRFHIVYGLSKDLSLAGFRVGVICSFNESVLAAAKKLTRFSTISAPTQRLVTSMLSDKRFIRDYLEINRTRIRQLHAVFVDCLSKLGIKCAKSSAGMFCWADMSGLIRPYSEKGEIELWEKFLSIAKINITPGSACHCIEPGWFRICFTTITLEEAPLVIERIRRVVESCNSSS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02358 525 SUPERFAMILY PLP-dependent transferases 107 519 IPR015424 -
Viun4g02358 525 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 359 372 IPR004838 GO:0003824|GO:0009058|GO:0030170
Viun4g02358 525 CDD AAT_like 176 516 - -
Viun4g02358 525 Gene3D - 158 408 IPR015421 GO:0003824
Viun4g02358 525 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 99 519 - -
Viun4g02358 525 MobiDBLite consensus disorder prediction 1 23 - -
Viun4g02358 525 Gene3D Aspartate Aminotransferase, domain 1 124 507 IPR015422 GO:0003824
Viun4g02358 525 Pfam Aminotransferase class I and II 137 514 IPR004839 GO:0009058|GO:0030170
Viun4g02358 525 MobiDBLite consensus disorder prediction 65 92 - -
Viun4g02358 525 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 170 186 - -
Viun4g02358 525 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 385 408 - -
Viun4g02358 525 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 229 250 - -
Viun4g02358 525 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 138 164 - -
Viun4g02358 525 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 283 307 - -
Viun4g02358 525 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 353 377 - -
Viun4g02358 525 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 207 227 - -
Viun4g02358 525 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 319 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02358 Viun-Chr4 39067142 39071448 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02358 K14270 - gmx:100800539 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02358 4 39067142 39071448 Viun4g02358 4 39067142 39071448 ECH