Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02160 ATGGGAACATCAGTGCAGGTAACGCCACTGTGTGGAGTGTACAATGAGAACCCTCTCTCGTATTTGGTCTCCATTGATGGCTTCAACTTCCTCGTCGACTGTGGCTGGAACGACCACTTTGACCCCTCCCTCCTTCAACCCCTGTCCAGGGTAGCATCAACCATTGATGCTGTCTTGCTTTCACATGCTGATACACTTCACCTTGGTGCCCTCCCATATGCCATGAAGCAGCTTGGACTCTCTGCCCCTGTTTATTCAACTGAGCCTGTCTACAGATTAGGCCTTCTCACTATGTATGACCAGTACCTCTCAAGAAAGCAAGTGTCGGAGTTCGATCTGTTCACACTGGATGATATTGATTCTGCTTTCCAGAGTGTAACGAGGCTAACATATTCTCAGAATCATCATCTGTCAGGCAAAGGAGAAGGAATTGTGATTGCGCCTCATGTTGCTGGACATCTTTTGGGAGGTACTGTTTGGAAAATTACAAAGGATGGTGAGGATGTAATATATGCTGTTGATTTTAATCATAGGAAAGAAAGGCATTTGAATGGAACTGCTCTTGGTTCTTTTGTGCGGCCTGCTGTTCTAATAACTGATGCTTACAATGCTTTGAACAATCAGCCTTACAGACGGCAAAAGGACAAAGAATTTGGAGATATCTTAAAGAAGACTCTAAGAGCAGGTGGCAATGTATTACTACCTGTTGACACTGCTGGACGAGTGTTGGAACTTATTCTGTTGTTGGAATCGTATTGGTCTGATGAAAACTTGAACTACCCTATATACTTTCTTACATATGTTGCTTCCAGCACAATTGATTACGTGAAGAGTTTCCTTGAGTGGATGAGTGATTCCATAGCAAAGTCTTTTGAAAAAACTCGTGAAAATATTTTTCTTCTGAAGTATGTTACCCTTCTGATTAACAAGACTGACCTTGAGAATGCTCCAGAGGGTCCAAAGGTGGTTCTAGCATCCATGGCAAGTTTGGAAGCAGGCTTTTCTCATGATATATTTGTTGAGTGGGCCAATGATTCGAAAAATCTTATGCTTTTTACTGAAAGAGGCCAGTTTGCCACACTAGCTCGTATGCTCCAAGCTGATCCACCACCAAAAGCTGTCAAAGTTGTTGTGTCCAAGCGTGTTCCTTTGGTTGGGGAAGAGCTAATTGCTTACGAAGAAGAGCAAGATCGAATAAAAAAAGAAGCTTTAAAAGCCAGTCTTATGAAAGAGGAAGAATTGAAAACATCTCATGGGTCTGATAATAATAATAGTGATCCAATGGTCATTGATTCTGGCAATAATCATGTACCACCAGAAGTGGCTGGTCCACGAGGTGGAGGATACCGGGATATATTTATTGATGGATTTGTTCCCCCTTCCACGAGTGTTGCTCCAATGTTTCCCTGTTATGAGAATACATCAGAATGGGATGATTTTGGTGAAGTCATAAATCCAGATGATTATGTAATTAAGGATGAAGACATGAATCAGATTGCAATGCACGGAGGTGGTGATATAAATGGAAAACTTGATGAAGGTGCTGCAAGTTTGATACTTGATACAAAGCCATCAAAAGTTGTATCTGATGAAAGGACTGTGCAAGTTAAGTGTTTATTGGTTTACATGGATTTTGAAGGACGTTCAGATGGAAGATCCATTAAAAATATTCTATCTCATGTGGCTCCCTTGAAGCTGGTTTTGGTGCATGGATCAGCAGAAGCTACAGAGCATCTGAAGCAGCACTGCCTCAAGCATGTTTGCCCTCACGTTTATGCTCCCCAAATTGACGAGACAATTGATGTGACCTCTGATTTATGTGCTTACAAGGTTCAACTATCTGAGAAGCTAATGAGTAATGTACTCTTCAAAAAGCTGGGAGATTATGAAGTAGCTTGGGTAGATGCTGTAGTAGGGAAGACAGAAAGCGACACGCTTTCTCTGCTCCCTGTTTCTGAAGCAGCTCCTCCGCATAAGTCTGTTCTTGTTGGTGATTTGAAATTGGCAGATATCAAACAGTTTCTCTCCGGCAAGGGTGTTCAGGTGGAGTTTGCTGGTGGGGCTTTACGTTGTGGTGAATACGTAACTCTTCGGAAAGTTGGGGATGCAACTCAGAAGGGTGGTGGTTCTGGTGCTCAGCAAATTGTTATTGAAGGTCCTCTGTGTGAAGATTACTATAAAATTCGTGACTATCTCTATTCACAATTTTATTTGCTTTAG 2220 0.4212 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSLLQPLSRVASTIDAVLLSHADTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDIDSAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKERHLNGTALGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPVDTAGRVLELILLLESYWSDENLNYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEKTRENIFLLKYVTLLINKTDLENAPEGPKVVLASMASLEAGFSHDIFVEWANDSKNLMLFTERGQFATLARMLQADPPPKAVKVVVSKRVPLVGEELIAYEEEQDRIKKEALKASLMKEEELKTSHGSDNNNSDPMVIDSGNNHVPPEVAGPRGGGYRDIFIDGFVPPSTSVAPMFPCYENTSEWDDFGEVINPDDYVIKDEDMNQIAMHGGGDINGKLDEGAASLILDTKPSKVVSDERTVQVKCLLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIDETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAVVGKTESDTLSLLPVSEAAPPHKSVLVGDLKLADIKQFLSGKGVQVEFAGGALRCGEYVTLRKVGDATQKGGGSGAQQIVIEGPLCEDYYKIRDYLYSQFYLL 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02160 739 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 533 584 IPR011108 -
Viun4g02160 739 Pfam Beta-Casp domain 242 365 IPR022712 -
Viun4g02160 739 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 1 738 IPR027075 GO:0005847|GO:0006378|GO:0006379
Viun4g02160 739 SMART Beta_Casp_2 242 365 IPR022712 -
Viun4g02160 739 CDD CPSF2-like_MBL-fold 8 203 IPR035639 -
Viun4g02160 739 MobiDBLite consensus disorder prediction 411 439 - -
Viun4g02160 739 SMART Lactamase_B_5a 17 230 IPR001279 -
Viun4g02160 739 Pfam Cleavage and polyadenylation factor 2 C-terminal 643 736 IPR025069 -
Viun4g02160 739 Gene3D - 7 257 IPR036866 -
Viun4g02160 739 FunFam Cleavage and polyadenylation specificity factor subunit 2 6 255 - -
Viun4g02160 739 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 602 IPR036866 -
Viun4g02160 739 Pfam Metallo-beta-lactamase superfamily domain 22 189 IPR001279 -
Viun4g02160 739 Coils Coil 392 412 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02160 K14402 - gmx:100777002 1407.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02160 4 37064851 37075648 Viun4g02160 4 37064851 37075648 ECH