Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02134 ATGTGGGCATACAGCAGAAAAGGAGATTCTGGGTTTTCATCATCTTCCACTGCAGAAGAAGTTACTCTTGGAATAGATGCCACTGGTCTTACTGCAATTGTCACAGGTGCATCAAGTGGTATTGGTGCAGAGACAGCACGAGTTCTTGCATTGCGTGGTGTTCATGTGATTATGGGAGTGATTGAAATGATTGATGCATATAATGTGAAGGAATCGATTCTTAAGCAAATTCCCACTGCTAAAGTTGATGTGATGAAGTTAGACCTAAGTTCCATGGCCTCTGTTCATCATTTTGCAGATGAGTTTAATTCAACTTCTCTTCCATTGAATATTTTGATAAACAATGCAGGGATTTGTGCACCCCCTTTCATGCTATCCGAGGATAACATTGAACTTCAATTTGCTATAAATTATTTAGGTCATTTTCTTCTAACAAATCTGTTGTTGGATAATATGAAGAAAACAACAAGAGAAAGTAAGATACAAGGAAGAATTATTAATGTCTCCTCAATGGGTCATCGATTTACGTATCCTCAAGGAATCCTTTTCGACAAAATTAACGATCCATCGAGTTACAGCAGTTGGCGTGCATATGGACAATCAAAGCTTGCTAATATTTTACATGTCAATGAACTTGCAAGACGTCTCAAGGAAGATGGAGTGGATATTACTGCTAATTCTCTCCATCCAGGAGCCACTTTCACCAATATATACCTTCAGAGTCCTCTACTCACAGGTGCGTGGAATCTGATAGGGCCATTTGTAATCCATTTGGTAGCAGGATTTTTTGTGAAAAATGTGCAGCAGGGAGCTTCAACAACATGCTATTTAGCATTGCACCCAGAAGTGAGTGGAATCAGTGGCAGTTATTTTGTCGATAATAATGTTTCAGAAACATCCTCGCACGGAAGGGACATGGATTTGGCCAAGAAGCTCTGGGATTTTAGCGTAAACTTGACAAACCAAAATTCAAGGTCACAATGA 984 0.3943 MWAYSRKGDSGFSSSSTAEEVTLGIDATGLTAIVTGASSGIGAETARVLALRGVHVIMGVIEMIDAYNVKESILKQIPTAKVDVMKLDLSSMASVHHFADEFNSTSLPLNILINNAGICAPPFMLSEDNIELQFAINYLGHFLLTNLLLDNMKKTTRESKIQGRIINVSSMGHRFTYPQGILFDKINDPSSYSSWRAYGQSKLANILHVNELARRLKEDGVDITANSLHPGATFTNIYLQSPLLTGAWNLIGPFVIHLVAGFFVKNVQQGASTTCYLALHPEVSGISGSYFVDNNVSETSSHGRDMDLAKKLWDFSVNLTNQNSRSQ 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02134 327 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 297 IPR036291 -
Viun4g02134 327 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Viun4g02134 327 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Viun4g02134 327 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Viun4g02134 327 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Viun4g02134 327 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Viun4g02134 327 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Viun4g02134 327 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Viun4g02134 327 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Viun4g02134 327 PANTHER RETINOL DEHYDROGENASE 10 320 - -
Viun4g02134 327 CDD retinol-DH_like_SDR_c_like 29 313 - -
Viun4g02134 327 Gene3D - 25 324 - -
Viun4g02134 327 Pfam short chain dehydrogenase 31 179 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02134 Viun-Chr4 36862662 36868448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02134 33 297 Acyl Lipid Metabolism Gene Families AT3G55290 27.698 2.05e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02134 - - gmx:100776100 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02134 4 36862662 36868448 Viun4g02134 4 36862662 36868448 ECH