Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02130 ATGTGGTGGTTGGGAAGAAAAGGACCTTCAGGATTCTCAGCTTCTTCTACTGCTGAGGAAGTTACTCAGGGAATTGATGCCACTGATCTCACTGCCATTGTTACAGGGGCAAGTAGTGGTATTGGTGCTGAAACTACACGCGTGCTTGCATTACGCGGTGTTCATATTGTTATGGGGATCAGAAATCTGGCAGCTGGTGGGGAGATCAAGGAAACGATTCAAAGAGATAACCCATCTGCAAAAATTGACATGATGGAGCTGGACCTTAGTTCAATGGAATCAGTTAGGAAATTTGCAGCACAATTCAAATCTTGTGGTCTTCCTCTGAATATACTTGTTAATAATGCAGGAATCATGGCAACACCATTCAGGCTTTCCAAAGACAATATAGAACTACAATTTGCAACAAACCATGTAGGTCATTTTCTTTTGACAAACTTATTGCTTGAAACAATGAAACAGACTGCTATTGAACAAAGGAAGGAAGGAAGGATCGTGAATGTCTCATCAAGACGTCATAAATTATCATATCCTGAAGGGATTAGATTTGATAAAATTAATGATGAATCAGGGTATAACAGTTTCTCTGCATATGGGCAGTCAAAGCTTGCCAATGTTTTGCATGCCAATGAGCTTGCCAGACGGCTTAAGCAGGAAGAGGGCACAAATATAACTGCAAACTCAATTAGCCCAGGACCAATTGCCACCAGTCTATTTCGTCATCACAGTTTAATAGATGTGTTTGTTGGTCTACTTGGTAAATATGTGATGAAAAATATCCAGCAGGGAGCAGCAACTACATGTTACGTTGCATTGCATCCACAGTTAAAAGGGTTGAGTGGCCGTTACTTTGCGGATAGTAACTTAGCCGAAGCAAGTTCAGAAGCAGTTGATCCAGAGCTCGGAAGGAAACTGTGGGAACATAGCTCAAATTTGGTCAAATCTTGA 948 0.4124 MWWLGRKGPSGFSASSTAEEVTQGIDATDLTAIVTGASSGIGAETTRVLALRGVHIVMGIRNLAAGGEIKETIQRDNPSAKIDMMELDLSSMESVRKFAAQFKSCGLPLNILVNNAGIMATPFRLSKDNIELQFATNHVGHFLLTNLLLETMKQTAIEQRKEGRIVNVSSRRHKLSYPEGIRFDKINDESGYNSFSAYGQSKLANVLHANELARRLKQEEGTNITANSISPGPIATSLFRHHSLIDVFVGLLGKYVMKNIQQGAATTCYVALHPQLKGLSGRYFADSNLAEASSEAVDPELGRKLWEHSSNLVKS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02130 315 CDD retinol-DH_like_SDR_c_like 31 306 - -
Viun4g02130 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Viun4g02130 315 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Viun4g02130 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Viun4g02130 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Viun4g02130 315 PRINTS Glucose/ribitol dehydrogenase family signature 222 239 IPR002347 -
Viun4g02130 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Viun4g02130 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Viun4g02130 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Viun4g02130 315 Pfam short chain dehydrogenase 31 179 IPR002347 -
Viun4g02130 315 Gene3D - 20 315 - -
Viun4g02130 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 289 IPR036291 -
Viun4g02130 315 PANTHER RETINOL DEHYDROGENASE 9 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02130 Viun-Chr4 36858600 36861572 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02130 29 170 Acyl Lipid Metabolism Gene Families AT1G62610 29.932 8.51e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02130 - - gmx:100775556 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02130 4 36858600 36861572 Viun4g02130 4 36858600 36861572 ECH