Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00393 ATGGCGTCTCAGAAGGCGATCGGTTTTGTTGGCGTTGATGAGTTCAGCTTGGAGATGGCGCATTCCGCGATTCGCCATGGATACGGTGTGCGAGCTTTTGAGATAAATAATCCTGTTATTGAAGAACTCGTGAAGCTTGGAGGAGTGAGATGTTCAAGCCCTTCGGAAGCTGGGAGAGATGTAATAGCTCTGGTTATCCTAATATCTGACATAGATCAAACTAATGATCTCATTTTTGGAGATGATGGTGCTTTGAAAGGTCTAAAACCAGATACTGTTCTTATTCTCCGTTCGACCTCATTACCATCATTTCTCCATAAACTGGAGAGGGATCTAGCAGAAATTCATGAGATTGCTTATGTTGTTGATGCATATGTCTCTTATGGGAGATCCGATGCTTTGAATGGAAAAGTCATCATTGCATCATCTGGAAGACTAGATGCAATTGCACGAGCACAGCATATTCTTACTGCAATGTGTGAAAAGCTCTTCACTTTTGAGGGTGAAATTGGTGGTGGCAGCAAGGTTAAAATGGTTAATGTGATGCTGGAAGGCATTCATTTCATTAATGCAGTGGAGGCCCTCTCTCTTGGTGCCAAAATTGGAATTCATCCTTGGATAATCTATGATATAATTTCCAATGCTGCAGGAAATTCATGGGCGTTCAAGAATTATTTACCCCTTTTGTTGAAGGGAGAGGTTAATCATCAAATTCTGAACACTTTTGTTAAGGAGTTGGAAACCATTTTGAATATGTCCAAGTCACTTACTTTTCCGCTTCCAATTTTGGCTGCTACTCATCTACAACTTATTCACGGGGCTTCGCTTGTTGATAGTGGAGAAGATATTACAATATTGACTAAGGTTTGGGAAAAGGTTTACGGGGTTAAAATTTTAGATGCTGCAAATGCTGATGCGTATAACCCAGAGCAATTGGCATCTAAATTTACAACTGATTCTAAGAGTGCGAGAAGGATTGGTTTTATCGGCCTTGGAGCTATGGGATTTGGCATGGCAACGCATTTAGTGAATTCAAAATTCTGCGTTGTTGGTTATGACGTGTATAAACCAACCCTAACACGATTCACAAATGCTGGTGGTCTGATTGGAAATTCTCCAGCTGAAGTGAGCAAAGATGTTGATGTTCTCATAATTATGGTGACAAATGAATCACAAGCAGAAAATGTTTTATATGGAGAAAATGGTGCAGTTTCAGCTCTTCCACCTGGAGCATCTATCATTCTCTCTTCCACGGTTTCCCCTGCATACGTGAGTCAGTTAGAGCATAGATTGCAAAATGAAGGTAAGAATTTGAAGTTGGTGGATGCCCCGGTTTCCGGTGGTGTTATGAGGGCCTCATTGGGAACACTTACGATAATGGCTTCAGGAGCTGATGATGCCCTTAAGAGTGCTGGTCAGGTCTTAGCAGCCTTGAGTGAGAAGCTTTATATTATCAAAGGTGGTTGTGGTTCTGGAAGTGGTATAAAGATGATTAACCAATTGCTTGCTGGAGTTCACATTGCCGCAGCAGCTGAGGCAATAGCATTTGCAGCTCGGTTGGGTTTGAATACAAGACTGTTGTTCGATTTTATTACAATTAGTGGGGGAACTTCCTGGATGTTTGAGAATCGTGGCCAACACATGATTGACAATGATTACACACCATGTTCAGCACTTGATATCTTTGTGAAGGACATGGGAATTGTTACTCGTGAATCATCTACATGGAAAGTTCCACTTCAGTTATCAACTATTGCTCACCAACTATATCTGGCAGGTTCTGCTGCTGGCTGGGGACGGATTGATGATGCTGGTGTTGTCAAGGTTTACGAGATGCTAACTGGTGTAAAAGTTGAAGGAAAACTCCAGGCTCAAAGGAAAGATACTATGTTACGTTCTCTTCCACCAGAGTGGCCCCAAGATCATGTTCTTGATATACAAACACTAAAAGAAAGCAATTCAAAGATATTAGTTGTATTAGATGATGATCCGACAGGAACACAAACTGTTCATGATATTGAAGTATTAACAGAATGGACCATTGAGTCACTGATTGAGCAGTTTAGAAAAAGTCCAAAATGCTTTTTCATTTTGACAAACTCCAGGTCACTGAGTTCTGACAAGGCCAGTGCACTGATAAAAGAGATTTGCAGAAATCTGGACATTGCGGCGAAATCATTTGACAGCATTGACTATTCCGTAATTTTGAGGGGAGATTCAACTTTACGAGGCCATTTTCCAGAGGAAGCAGATGCGGTTGTTTCAGTATTGGGTGAGATGGATGCATGGATAATTTGTCCCTTTTTCCTTCAAGGGGGTCGTTATACTATTGCAGACACACACTATGTTGATGATTCTGATATGCTTGTTCCTGCAGGGGACACAGAGTTTGCCAAAGATGCTTCCTTTGGCTACAAATCTTCAAACCTGCGTGATTGGGTAGAGGAGAAGACAAATGGACGAGTACTTGCAAGTAGTGTTGCATCTGTTTCTATCCAACTTTTGAGGAAAGGAGGTCCAAATGCAGTTTGTCATCATCTGTGCAGTTTGCAGAAGGGGACAATATGCATAGTTAATGCGGCTAGTGAACGAGACATGACTGTATTTGCACTTGGAATGATCAAGGCAGAATTGACAGGAAAACGTTTCTTGTGTCGCACTGCTGCTAGTTTTGTCTCTGCCCTTATGGGAATCATCTCTAAGCCTCCAATATTGCCAAGTGATCTAGGAATAGCTAGTGAAAAGAATGGTGGTCTGATAGTAGTGGGGTCCTATGTTCCAAAAACAACAAAGCAGGTTGAAGAACTCAAACTACAGTGTGGTCAGTTCTTAAAAAGCATTGAGGTATCAGTTGAAAAACTTGCAATGAGCCCTATTGAGGTGAGGGAGGAGGAAATCAGTAGAACAGCTGAATTATCAGACGCATATCTTAAAGCTCATAAAGACACTTTAATAATGACCAGCCGAAATCTCATTACTGGAAGAACTGCAGCTGAGAGTTTGGACATTAACTATAAAGTGAGTTCTGCTTTGGTGGAAATAGTGAAAAGAGTAACTACAAAACCTCGCTACATAATTGCAAAGGGTGGTATTACGTCTTCAGACCTCGCTACAAAAGCCCTTGGTGCTAGATGTGCGAAGATAGTTGGACAAGCACTTGCTGGTATTCCCTTGTGGCAATTAGGCCCTGAAAGTAGACATCCTGGAATTCCTTACATTGTCTTCCCAGGCAATGTTGGTAACAGCACAGCATTGGCAGAAGTTGTGAAGTCATGGACTTACCCAATCAGATTTACATCAACGAAAGAAATTCTTAATAATGCAGAAAAGGGTGGTTATGCTGTTGGAGCATTTAATGTCTACAATTTGGAAGGAGTTGAAGCTGTTGTTTCTGCTGCAGAGGAAGAACAGAGTCCTGCTATATTACAGATCCATCCAGGTGCCTTGAAGCAAGGAGGAATTCCCTTGGTTGCTTGTTGCATTTCTGCTGCAAAGCAAGCCAGTGTTCCAATTACTGTTCACTTTGATCATGGAACTTCAAAGCAGGATCTTGTGGAAGCTCTTGACCTGGGATTCAGTTCCATTATGGTTGATGGTTCACATCTTTCTTTCAACGAAAATGCTGCATACACAAAATTTATAGCATTACTGGCGCACTCAAAAAATATGCTGGTGGAAGCTGAGCTAGGAAGATTGTCAGGGACAGAAGATGATTTGACTGTAGAAGAGTTTGAAGCCAGACTAACAGATGTGAATATGGCATCAAAATTCATAGATGAGACTGGAATAGATGCTTTGGCAGTGTGTATTGGTAATGTGCATGGGAAGTACCCTGCAAGTGGTCCAAATCTCAGACTTGATCTGCTCAAGGAGCTGCATGCTTTGAGCCTGAAGAAAGGAGTTTATCTGGTGCTTCATGGTGCGTCTGGTTTGAGCAAAGAACTTGTTAAGGAATGCATAAATCTTGGTGTTAGAAAGTTCAATGTGAACACCGAAGTAAGGAAAGCATACATGGAGTCCCTGATTACCCCCAAGAACGATCTAGTTCATGTCATGGCTTCTGCTAAGGAAGCCATGAAAGCTGTGGTTGCAGAAAAGATGCATCTCTTTGGTTCAGCAGGAAAGGCCTAA 4131 0.4176 MASQKAIGFVGVDEFSLEMAHSAIRHGYGVRAFEINNPVIEELVKLGGVRCSSPSEAGRDVIALVILISDIDQTNDLIFGDDGALKGLKPDTVLILRSTSLPSFLHKLERDLAEIHEIAYVVDAYVSYGRSDALNGKVIIASSGRLDAIARAQHILTAMCEKLFTFEGEIGGGSKVKMVNVMLEGIHFINAVEALSLGAKIGIHPWIIYDIISNAAGNSWAFKNYLPLLLKGEVNHQILNTFVKELETILNMSKSLTFPLPILAATHLQLIHGASLVDSGEDITILTKVWEKVYGVKILDAANADAYNPEQLASKFTTDSKSARRIGFIGLGAMGFGMATHLVNSKFCVVGYDVYKPTLTRFTNAGGLIGNSPAEVSKDVDVLIIMVTNESQAENVLYGENGAVSALPPGASIILSSTVSPAYVSQLEHRLQNEGKNLKLVDAPVSGGVMRASLGTLTIMASGADDALKSAGQVLAALSEKLYIIKGGCGSGSGIKMINQLLAGVHIAAAAEAIAFAARLGLNTRLLFDFITISGGTSWMFENRGQHMIDNDYTPCSALDIFVKDMGIVTRESSTWKVPLQLSTIAHQLYLAGSAAGWGRIDDAGVVKVYEMLTGVKVEGKLQAQRKDTMLRSLPPEWPQDHVLDIQTLKESNSKILVVLDDDPTGTQTVHDIEVLTEWTIESLIEQFRKSPKCFFILTNSRSLSSDKASALIKEICRNLDIAAKSFDSIDYSVILRGDSTLRGHFPEEADAVVSVLGEMDAWIICPFFLQGGRYTIADTHYVDDSDMLVPAGDTEFAKDASFGYKSSNLRDWVEEKTNGRVLASSVASVSIQLLRKGGPNAVCHHLCSLQKGTICIVNAASERDMTVFALGMIKAELTGKRFLCRTAASFVSALMGIISKPPILPSDLGIASEKNGGLIVVGSYVPKTTKQVEELKLQCGQFLKSIEVSVEKLAMSPIEVREEEISRTAELSDAYLKAHKDTLIMTSRNLITGRTAAESLDINYKVSSALVEIVKRVTTKPRYIIAKGGITSSDLATKALGARCAKIVGQALAGIPLWQLGPESRHPGIPYIVFPGNVGNSTALAEVVKSWTYPIRFTSTKEILNNAEKGGYAVGAFNVYNLEGVEAVVSAAEEEQSPAILQIHPGALKQGGIPLVACCISAAKQASVPITVHFDHGTSKQDLVEALDLGFSSIMVDGSHLSFNENAAYTKFIALLAHSKNMLVEAELGRLSGTEDDLTVEEFEARLTDVNMASKFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELHALSLKKGVYLVLHGASGLSKELVKECINLGVRKFNVNTEVRKAYMESLITPKNDLVHVMASAKEAMKAVVAEKMHLFGSAGKA 1376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00393 1376 PANTHER 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED 318 620 - -
Viun4g00393 1376 SUPERFAMILY YgbK-like 657 1089 - -
Viun4g00393 1376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 163 IPR036291 -
Viun4g00393 1376 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 171 286 IPR029154 GO:0051287
Viun4g00393 1376 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 490 610 IPR029154 GO:0051287
Viun4g00393 1376 ProSitePatterns 3-hydroxyisobutyrate dehydrogenase signature. 328 341 IPR002204 GO:0016491
Viun4g00393 1376 Gene3D - 171 294 IPR013328 GO:0016491
Viun4g00393 1376 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 489 611 IPR008927 -
Viun4g00393 1376 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 169 297 IPR008927 -
Viun4g00393 1376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 324 482 IPR036291 -
Viun4g00393 1376 Gene3D - 319 486 - -
Viun4g00393 1376 Gene3D - 1 167 - -
Viun4g00393 1376 Pfam Fructose-bisphosphate aldolase class-II 1100 1375 IPR000771 GO:0005975|GO:0008270|GO:0016832
Viun4g00393 1376 Gene3D - 487 619 IPR013328 GO:0016491
Viun4g00393 1376 Pfam Nucleotide-binding C-terminal domain 919 1085 IPR031475 -
Viun4g00393 1376 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 325 483 IPR006115 GO:0050661
Viun4g00393 1376 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 7 164 IPR006115 GO:0050661
Viun4g00393 1376 Gene3D Aldolase class I 1092 1376 IPR013785 -
Viun4g00393 1376 NCBIfam ketose-bisphosphate aldolase 1098 1376 IPR000771 GO:0005975|GO:0008270|GO:0016832
Viun4g00393 1376 Pfam Sugar-binding N-terminal domain 657 895 IPR010737 -
Viun4g00393 1376 Gene3D - 656 898 IPR037051 -
Viun4g00393 1376 SUPERFAMILY Aldolase 1099 1376 - -
Viun4g00393 1376 Gene3D - 910 1091 IPR042213 -
Viun4g00393 1376 CDD TBP_aldolase_IIB 1101 1374 IPR000771 GO:0005975|GO:0008270|GO:0016832
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00393 Viun-Chr4 2607022 2639299 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00393 - - gmx:100779987 2444.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00393 4 2607022 2639299 Viun4g00393 4 2607022 2639299 ECH