Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00262 ATGGAAGATGATGAATTTCCTCAGATCAAAGGTGTTGTTATAATCACCCTTCCACCCCCTGATAACCCTTCTTTGGGCAAAACCATCACTGCTTTTACTTTCTCTGACCCTTCTTCTCCTCAACCCTCGCTTCTTCAACAATCCAACCAAAACCAAACAAACCTCAATCATCACAACAACACTGATCCTCCCCTTCGCTCCAACCCATCTAATTCTCAGCTTAGTTTTTCACTCAGAAGACTCTTCCACGCCACCCCACTGAAGCTTTTCTCCTTCTTTGGTCTTCTTCTCTTTGCTCTCTTTCTCTATGGTTCTGTTTCTTCAACCACCACTCTGGAACTGAGTGGCCCCAAGAATGATGCTGATGATGATGATGGCAAACCCGGATCATATTTGCTCCCTTTGTATCCTAAATTTGGTGTTTTGGGGCAGAAGAACATGAAGCTCCAAGTGGGGAAGCTTGTTCATAAAGATAAGTTTTTGACACAAACCAAAAATAGGGTTGGTTCTGAGGTTGTGGCCGTTGACTCTTCTTCGGTTTTTCCTGTCAGTGGCAATGTTTTTCCCGACGGGTTGTATTTCACTATTTTACGTGTTGGAAATCCTCCAAGAAGTTATTTTCTTGATGTGGATACAGGGAGTGACTTAACTTGGATGCAGTGTGATGCTCCTTGCACAAGTTGTGGAAAGGGAGCTCATGCCCTATACAAGCCAACAAGATCCAATGTAGTATCATCCATGGACTCTCTCTGCTTGGATGTTCAGAAAAATCAGAAGAATGGGCATCACGAAAGTTTGCAACAGTGTGACTATGAAATTCAATATGCAGATAGGAGTTCTTCCTTGGGAGTTCTTATTAGAGACGAGCTTCATCTTGTATCTAAAAATGGATCCAAAACCAAGCTAAATTTTGTTTTTGGGTGTGGATATGATCAAGAAGGCTTACTTTTGAACACATTGGCAAAGACAGATGGAATCATGGGACTGAGCAGGGCAAAAGTGAGCCTACCTAACCAGTTAGCAAGTAAAGGGCTTATTAAGAATGTGGTTGGTCATTGCTTGAGCAATGATGAAGTTGGTGGTGGTTTCATGTTTTTGGGTGATGATTTCTTGCCATATTGGGGCATGACTTGGGTTCCCATGGCTTATACCCTTACTACGGATTTATACCAAACTGAGATTCTTGGAATAAATTATGGAAATCGGCAACTGAGTTTTGATGGGCAAAGCAAAGTAGGAAAGGTGGTTTTTGATAGTGGCAGCTCGTATACATATTTCCCAAAAGAAGCATACTTGGATCTTGTTGCTTCTCTTAATGAAGTTTCTGAGTTGAGACTCGTTCAAGATGATTTAGATACTACTTTACCTATTTGCTGGCAAGCAAATTTCCCAATCAAATCTGTCAAAGATGTCAAGGATTACTTCAAGACCTTAACTCTTCGGTTTGGAAACAAGTGGTGGATTTTGTCCACAATTTTTCAGATTCCTCCAGAGGGTTACTTGATCATTAGTAACAAAGGCAATGTGTGTTTGGGTATCCTTGATGGTAGTAATGTAAATGATGGATCCTCAATTATTCTTGGAGACATTTCATTCAGAGGATACATGGTTGTGTATGATAATGCAAAGCAGAAAATTGGTTGGAAGAGAGCAGATTGTGACATGTCAAGCAGAAGATTGAGAAAGAAAAACAGTTTTATACCTGATACCATGCTATAA 1719 0.4066 MEDDEFPQIKGVVIITLPPPDNPSLGKTITAFTFSDPSSPQPSLLQQSNQNQTNLNHHNNTDPPLRSNPSNSQLSFSLRRLFHATPLKLFSFFGLLLFALFLYGSVSSTTTLELSGPKNDADDDDGKPGSYLLPLYPKFGVLGQKNMKLQVGKLVHKDKFLTQTKNRVGSEVVAVDSSSVFPVSGNVFPDGLYFTILRVGNPPRSYFLDVDTGSDLTWMQCDAPCTSCGKGAHALYKPTRSNVVSSMDSLCLDVQKNQKNGHHESLQQCDYEIQYADRSSSLGVLIRDELHLVSKNGSKTKLNFVFGCGYDQEGLLLNTLAKTDGIMGLSRAKVSLPNQLASKGLIKNVVGHCLSNDEVGGGFMFLGDDFLPYWGMTWVPMAYTLTTDLYQTEILGINYGNRQLSFDGQSKVGKVVFDSGSSYTYFPKEAYLDLVASLNEVSELRLVQDDLDTTLPICWQANFPIKSVKDVKDYFKTLTLRFGNKWWILSTIFQIPPEGYLIISNKGNVCLGILDGSNVNDGSSIILGDISFRGYMVVYDNAKQKIGWKRADCDMSSRRLRKKNSFIPDTML 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00262 572 PRINTS Pepsin (A1) aspartic protease family signature 415 426 IPR001461 GO:0004190|GO:0006508
Viun4g00262 572 PRINTS Pepsin (A1) aspartic protease family signature 199 219 IPR001461 GO:0004190|GO:0006508
Viun4g00262 572 PRINTS Pepsin (A1) aspartic protease family signature 525 540 IPR001461 GO:0004190|GO:0006508
Viun4g00262 572 MobiDBLite consensus disorder prediction 36 70 - -
Viun4g00262 572 ProSiteProfiles Peptidase family A1 domain profile. 193 549 IPR033121 -
Viun4g00262 572 SUPERFAMILY Acid proteases 184 555 IPR021109 -
Viun4g00262 572 Gene3D Acid Proteases 171 368 IPR021109 -
Viun4g00262 572 FunFam Aspartyl protease APCB1 373 559 - -
Viun4g00262 572 PANTHER ASPARTYL PROTEASES 97 547 IPR001461 GO:0004190|GO:0006508
Viun4g00262 572 FunFam Aspartyl protease family protein 170 368 - -
Viun4g00262 572 Pfam Xylanase inhibitor N-terminal 193 368 IPR032861 -
Viun4g00262 572 Gene3D Acid Proteases 374 555 IPR021109 -
Viun4g00262 572 Pfam Xylanase inhibitor C-terminal 401 549 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00262 Viun-Chr4 1542448 1546185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00262 175 554 Miscellaneous Gene Families AT1G77480 46.214 5.44e-110 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00262 - - gmx:100810687 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00262 4 1542448 1546185 Viun4g00262 4 1542448 1546185 ECH