Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g00248 ATGGCAAATTTTCTTCTCTCACTTTTCACCATTTTCACAATCCTCTCTCTCACCTCTTCTCGCACCATCACTACTCCTTCACACACCACCATTCTCAATATCTCTTCTTCCCTTCACCAAGCCCATCAAATCCTCTCCTTCAAACCCCAAAATGCTCTGCAACAACAAGCTTTAACTCAGCAACACCACCCCACTTCACCATCTTCGTCTTTCTTCTCCGTTCAGCTCCACTCAAGGGAAACCCTCGTCAATGAGCAACACCCAGATTACAAAACCCTAGTTTTGGCCCGACTCGCCCGCGACTCGGCACGAGTCAACTCGCTCGAGACCAGGCTTCAGCTCGCACTCTATGGCGTCAAAAGATCGGACCTTTTCCCTACCCAGACGGAGGTCCGCCTCGAAGACCTCTCCACGCCTGTCTCCTCCGGCACCTCCCAGGGAAGCGGCGAGTACTTCTCACGCGTCGGCGTCGGCCAGCCCGCAAAGCCCTTCTACATGGTGCTCGACACAGGCTCCGACGTGAACTGGCTCCAATGCAAACCCTGCTCAGATTGTTACCAACAGTCCGACCCGGTTTTCGACCCGACATCCTCCTCCTCGTACTACCCATTAACCTGCGACGCGCAGCAGTGCCAGGACCTTGAAATGTCGGCGTGCAAAAACGGTAGATGCGAATACCAAGTTTCCTACGGAGACGGGTCGTTCACCGTAGGCGAGTACGTCACCGAAACGGTGTCGTTCGGCGGGTCCGGGTCCGTTAATCGGGTCGCGCTCGGGTGCGGCCACGATAACGAGGGGCTGTTCGTCGGGGCTGCGGGGCTTCTCGGTCTCGGTGGTGGGCCGTTGTCATTAACCTCGCAAATCAAAGCGGCGTCGTTTTCGTACTGTTTAGTGGACCGCGACTCGGGTACATCGTCCACTCTTGAGTTCAACTCGCCTCGACCCAGTGACTCGGTCACCGCGCCGTTGCTGAAGAACCGCCAAGTGAACACGTTCTACTACGTGGAACTCACCGGATTTAGCGTCGGCGGCGAGATGGTCTCCATCCCACCGGACACTTTCGCCGTCGACCAGTCCGGCGTCGGCGGGGTGATCGTCGATTCCGGTACCGCCATAACTCGGTTGCAGACCCGGGCCTACAATGCCGTGCGCGACGCATTCAAGAGGATGACCCAGAACCTGCGTCCCGCGGAGGGCGTTGCGCTGTTCGACACTTGCTACGACCTGTCGTCCCTGCAGTCTGTGCGCGTGCCGACGGTGTCGCTTCACTTCTCCGGCGACAAGATATGGGCGCTTCCGGCGAAGAATTATCTGATTCCGGTGGACGGCGCCGGAACTTACTGTTTCGCGTTTGCGCCAACGTCGTCGTCTCTGTCGATCATAGGGAACGTGCAGCAGCAAGGGACACGTGTCAGTTTCGATCTAGCGAACTCTTTAGTCGGATTCTCTTCCAACAAGTGCTAG 1464 0.571 MANFLLSLFTIFTILSLTSSRTITTPSHTTILNISSSLHQAHQILSFKPQNALQQQALTQQHHPTSPSSSFFSVQLHSRETLVNEQHPDYKTLVLARLARDSARVNSLETRLQLALYGVKRSDLFPTQTEVRLEDLSTPVSSGTSQGSGEYFSRVGVGQPAKPFYMVLDTGSDVNWLQCKPCSDCYQQSDPVFDPTSSSSYYPLTCDAQQCQDLEMSACKNGRCEYQVSYGDGSFTVGEYVTETVSFGGSGSVNRVALGCGHDNEGLFVGAAGLLGLGGGPLSLTSQIKAASFSYCLVDRDSGTSSTLEFNSPRPSDSVTAPLLKNRQVNTFYYVELTGFSVGGEMVSIPPDTFAVDQSGVGGVIVDSGTAITRLQTRAYNAVRDAFKRMTQNLRPAEGVALFDTCYDLSSLQSVRVPTVSLHFSGDKIWALPAKNYLIPVDGAGTYCFAFAPTSSSLSIIGNVQQQGTRVSFDLANSLVGFSSNKC 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g00248 487 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 166 177 IPR001969 GO:0004190|GO:0006508
Viun4g00248 487 Pfam Xylanase inhibitor C-terminal 333 483 IPR032799 -
Viun4g00248 487 Pfam Xylanase inhibitor N-terminal 151 310 IPR032861 -
Viun4g00248 487 Gene3D Acid Proteases 311 487 IPR021109 -
Viun4g00248 487 FunFam Aspartyl protease AED1 132 311 - -
Viun4g00248 487 FunFam Aspartyl protease family protein 2 312 487 - -
Viun4g00248 487 ProSiteProfiles Peptidase family A1 domain profile. 151 483 IPR033121 -
Viun4g00248 487 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 364 375 IPR001969 GO:0004190|GO:0006508
Viun4g00248 487 SUPERFAMILY Acid proteases 145 487 IPR021109 -
Viun4g00248 487 CDD cnd41_like 150 487 IPR033873 -
Viun4g00248 487 Gene3D Acid Proteases 126 310 IPR021109 -
Viun4g00248 487 PANTHER ASPARTYL PROTEASES 45 481 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g00248 Viun-Chr4 1412851 1414640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g00248 142 487 Miscellaneous Gene Families AT1G77480 26.546 1.11e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g00248 K22683 - gmx:100784849 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g00248 4 1412851 1414640 Viun4g00248 4 1412851 1414640 ECH