Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05676 ATGACCTTCGACTTAGATTCCATCGCTCGCAAAATCGACGTTGATAATCGCATTCCCCTCCGCTATTACTATCGGATTGCCGATAGCCTCCTCAAGCAGGCAAGTATCTACAGGGAGGAGAATAATGTAGTTGACTTGTACATCATACTCGTTAGATTTTTAAGTTTGGTTTCTGAAACTATACCATATCATCGAGATTATCATGCTTCGCCTCCCAATGAAAGAGCAGCTTATAAGAAGAAATCACGACCTGTATTGGATGAGCTTGAATCTTTGAAGCCTGAGTTTAAACGCCGGGTGGAAAAATTAAAAGACTTGCATGTAAAAGCTCCATTGCCCGAGGAAAATGGCTTCAATAAGGCTTTGCAGAGTTCTGTAAATTCATCTTTGGAGTGGCCAGTTGTCAATAAAAGTAATAACTTGAGCGTGGATTTTAAACAGCCTTCTGGAGTCGGTTCACACTCTTCATGGAATTACAATAGTATGTCATCATCAGATTCAAGGCCTATTGATAAGCAGTTCCAGAAACTATCTCTTAGTCTACCTGCTCCAAATAAGGAGACTTTGTCCAGACACTCATTTTTAGGACCAAATGGCCTTAGGGGGCAATGGCTTGGTCCTAGTGCAGAAATAAAGGTTCAATATCCAAGCAGTGATCTCACACACGTGAATGATTCAAGCCTGAATCAGACTGGGCTGTATGACATTCTGGCAATTAAAGATAGCGATCAAGGACCAGTTACATCCACCATGGACTCAGTTCTCTCCTTGGATGATGGAAGATGGTCGCGACCTTCTGTTGAGTATGGTTCTTCTGTTGTAACTGAATCAAGGGAGGACCCCTTACAATCGCTCAACATCAAGCAACCTTTGCCACCTCCTGTTCTTGCGCAGGTGCACCCAGAATGTGCCCATATTCCTCCTTCAAAAGTTGCAGATCCAAGACCGGGACCAGCTAAATCTTCTCATGATTCTGGACTTGGTCCAACAACATATCAACACCTACACATTCCTGTCAAAATGATGGAAGATTTTTTGAGATTAGCTTCGCAGAACACACGGAAGAACTTAGAGACATGTGGTGTTCTTGCAGGATCCTTGAAAAACAGGGTATTCCATATCACGACACTTATAATCCCAAAGCAGGAATCAACCTCAGACTCGTGTTCAACTTTGAACGAAGAAGAAATATTTGAAGTTCAAGACAGCTTATCACTCTTTCCTTTAGGTTGGATACATACACATCCATCACAAACTTGTTTCATGTCTTCTGTGGATCTACACACTCATTACTCATACCAGATCATGTTACCAGAGGCAATTGCTATTGTCATGGCCCCTACAGATACGACTAGTCCACATGGCATATTTCATCTATCTGATCCAGGTGGTGTTTCTGTAATTCGTAACTGTCAACAACGTGGATTTCATCCCCACGAAGAGCCTTCGGATGGAAGTCCAATATATGAGCATTGCTCTCATGTCTATATGAACGCTAACATGGGGTTCGATGTTGTTGACCTTCGAGACCGATGA 1536 0.4251 MTFDLDSIARKIDVDNRIPLRYYYRIADSLLKQASIYREENNVVDLYIILVRFLSLVSETIPYHRDYHASPPNERAAYKKKSRPVLDELESLKPEFKRRVEKLKDLHVKAPLPEENGFNKALQSSVNSSLEWPVVNKSNNLSVDFKQPSGVGSHSSWNYNSMSSSDSRPIDKQFQKLSLSLPAPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSDLTHVNDSSLNQTGLYDILAIKDSDQGPVTSTMDSVLSLDDGRWSRPSVEYGSSVVTESREDPLQSLNIKQPLPPPVLAQVHPECAHIPPSKVADPRPGPAKSSHDSGLGPTTYQHLHIPVKMMEDFLRLASQNTRKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCSTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTTSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNANMGFDVVDLRDR 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05676 511 Pfam USP8 dimerisation domain 4 99 IPR015063 -
Viun3g05676 511 MobiDBLite consensus disorder prediction 146 168 - -
Viun3g05676 511 MobiDBLite consensus disorder prediction 307 330 - -
Viun3g05676 511 SUPERFAMILY USP8 N-terminal domain-like 3 113 - -
Viun3g05676 511 Gene3D Cytidine Deaminase, domain 2 319 511 - -
Viun3g05676 511 Gene3D - 2 124 - -
Viun3g05676 511 CDD MPN_AMSH_like 332 509 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Viun3g05676 511 FunFam AMSH-like ubiquitin thioesterase 3 320 511 - -
Viun3g05676 511 Coils Coil 86 106 - -
Viun3g05676 511 PANTHER AMSH-LIKE PROTEASE 5 509 - -
Viun3g05676 511 SUPERFAMILY JAB1/MPN domain 334 465 - -
Viun3g05676 511 ProSiteProfiles MPN domain profile. 335 465 IPR037518 -
Viun3g05676 511 SMART pad1_6 334 462 IPR000555 GO:0005515|GO:0008233|GO:0008237
Viun3g05676 511 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 331 438 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05676 Viun-Chr3 62372455 62380571 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05676 K11866 - gmx:100812784 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05676 3 62372455 62380571 Viun3g05676 3 62372455 62380571 ECH