Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05651 ATGAACGCCGTCCCTTCTTCTTCCTCTTCCGCCTTCGCTTTCGTAACTCAGTCCAAGAACCCTAACTATATCTTCAAGCTCACACATAAAGTACCCATTTTTCCCCTACACTCACATGCTCCGTGTTGCTCTCTCAGCGACTCATCCTCCTCGTTCACCACGGTGCTGGACAAAAATGCCCTTTCATCGGAACAGAATTACAGCAATGCAGTTTCGCCGGAAGACTCAGGCTCCGTGGAAGCTCTTGCGGTTCGCCGGCCGGTGACGGATTTTTCCGGCGAAGAGGAAGAGGAGGAGGCGGAGGAGGAGGAAGAAGATAAGGAGAACGAGGCGGATGACGGTGGTGACGCGAAGGCCTCGGTGATCGACGCGGGGCTTGCGAAATTCGCGAAGAAGATGCCCATGTTTGAACCTGAGAGGGTGGAATCGAAAGAGAGACCCCTGAAAGTGAATTTGGACTTGGCGTTATACAGGGCGAAGCTTATGGCTAGAAGAAGCTTTCGATATGAAGAAGCAGAGGCATTGCTTCGAAAGTGTATAAGCCTCTGGCCTGAAGATGGTCGACCTTACGTGGTACTTGGAAAGATTTTGAGCAAGCAATCGAAAACAGGTGAAGCCAGAGAGATATACGAGAAGGGTTGCCAGGCTACGCAGGGTGAAAATGCTTACATTTGGCAGTGCTGGGCTGTTCTTGAAATGCAAATGGGAAATTTGAGGAGAGCAAGAGAGTTGTTTGATGCTGCGACGGTTGCTGATAAGAAGCATGTTGCTGCTTGGCATGGATGGGCAGTTCTAGAGTTAAAGCAGGGAAATATAAAGAAGGCAAGGAGTCTACTCGGTAAAGGTCTTCAATATGGTGGACAGAATGAGTACATATACCAAACACTTGCACTGCTTGAAGCTAGAGCAAAAAGATATCAGCAGGCTCGTTATTTATTCAATCAGGCCACAAAGTGTAATCCTAATAGCTGTGCTAGTTGGCTTAGTTGGGCACAAATGGAGGTGGAACAAGAAAACTACCGTGCTGCTAGGAAATTGTTTGAGAAAGCAGTACAGGCTAGTCCCAAAAATAGGTTTGCTTGGCATGTATGGGGCGTTTTTGAAGCAAACATTGGTAACATTGACAAGGGAAGAAAACTTTTAAAGATAGGCCACACTCTAAATCCGAGGGATGCTGTTCTACTTCAATCTCTTGCTTTATTAGAATACCAACACTCAACTGCAAACCTTGCTCGGGTTTTGTTCAGGAGAGCGTCAGAATTGAATCCAAGGCACCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAAGGAAACATGAATAAAGCCAGAGAATTCTACCAAAAAACTCTATCAATTGATCAGAACAGTGAAACTGCTGCCAGATGCCTTCAGGCCTGGGGTGTTCTGGAGCAGAGGGTTGGCAATCTTTCAACTGCACGTAGATTATTTAAATCCTCGCTGAATGTAAATTCTCAGAGTTATGTGACATGGATGACTTGGGCAGCAATGGAGGAAGAACAAGGAAACTCCGTGCGTGCTGAAGAGATTCGTAATCTCTATTTCCAACAGCGCACAGAAGTTGTAGATGATGCTTCATGGGTTATGGGATTCTTAGATATTTTAGACCCTGCCATTGACACTTTAAAGACGCTCCTCAAGCTGAGCCCAAATTCCTACAACATGCCGTTTAATTCTTCGAGAAATATTTCGGGAACAGATAAAAACAGTGGCGATTTTTCTATTGAGGACGATGATGAGGATGATGCGAATGGTGAAAGTGACTTCGATTTGGATGCTTTCATTATGAAAAGGTTATCCTTAGATTCGTCCAATCTGGAAATTCAGTTGGAAGCGCCCAAAATTTCTTCTGAGAAGAGAATTCCACCATCTGGTAGAAGGATATGGCGACCAAATAACAGAATTGCTAAAGTGCAAGTACAAAGAAATGTTGTTTAG 1965 0.4519 MNAVPSSSSSAFAFVTQSKNPNYIFKLTHKVPIFPLHSHAPCCSLSDSSSSFTTVLDKNALSSEQNYSNAVSPEDSGSVEALAVRRPVTDFSGEEEEEEAEEEEEDKENEADDGGDAKASVIDAGLAKFAKKMPMFEPERVESKERPLKVNLDLALYRAKLMARRSFRYEEAEALLRKCISLWPEDGRPYVVLGKILSKQSKTGEAREIYEKGCQATQGENAYIWQCWAVLEMQMGNLRRARELFDAATVADKKHVAAWHGWAVLELKQGNIKKARSLLGKGLQYGGQNEYIYQTLALLEARAKRYQQARYLFNQATKCNPNSCASWLSWAQMEVEQENYRAARKLFEKAVQASPKNRFAWHVWGVFEANIGNIDKGRKLLKIGHTLNPRDAVLLQSLALLEYQHSTANLARVLFRRASELNPRHQPVWFAWGWMEWKEGNMNKAREFYQKTLSIDQNSETAARCLQAWGVLEQRVGNLSTARRLFKSSLNVNSQSYVTWMTWAAMEEEQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFLDILDPAIDTLKTLLKLSPNSYNMPFNSSRNISGTDKNSGDFSIEDDDEDDANGESDFDLDAFIMKRLSLDSSNLEIQLEAPKISSEKRIPPSGRRIWRPNNRIAKVQVQRNVV 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05651 654 SUPERFAMILY TPR-like 360 571 IPR011990 GO:0005515
Viun3g05651 654 Coils Coil 93 113 - -
Viun3g05651 654 SMART tpr_5 187 220 IPR019734 GO:0005515
Viun3g05651 654 SMART tpr_5 153 186 IPR019734 GO:0005515
Viun3g05651 654 SMART tpr_5 222 255 IPR019734 GO:0005515
Viun3g05651 654 SMART tpr_5 256 289 IPR019734 GO:0005515
Viun3g05651 654 SMART tpr_5 463 496 IPR019734 GO:0005515
Viun3g05651 654 SMART tpr_5 426 459 IPR019734 GO:0005515
Viun3g05651 654 SMART tpr_5 392 425 IPR019734 GO:0005515
Viun3g05651 654 SMART tpr_5 324 357 IPR019734 GO:0005515
Viun3g05651 654 SMART tpr_5 290 323 IPR019734 GO:0005515
Viun3g05651 654 MobiDBLite consensus disorder prediction 566 596 - -
Viun3g05651 654 Pfam Tetratricopeptide repeat 231 279 - -
Viun3g05651 654 Pfam Tetratricopeptide repeat 296 357 - -
Viun3g05651 654 SUPERFAMILY TPR-like 117 402 IPR011990 GO:0005515
Viun3g05651 654 MobiDBLite consensus disorder prediction 93 111 - -
Viun3g05651 654 Gene3D Tetratricopeptide repeat domain 94 394 IPR011990 GO:0005515
Viun3g05651 654 Gene3D Tetratricopeptide repeat domain 395 545 IPR011990 GO:0005515
Viun3g05651 654 ProSiteProfiles TPR repeat profile. 290 323 IPR019734 GO:0005515
Viun3g05651 654 SMART hat_new_1 338 370 IPR003107 GO:0006396
Viun3g05651 654 SMART hat_new_1 236 268 IPR003107 GO:0006396
Viun3g05651 654 SMART hat_new_1 304 336 IPR003107 GO:0006396
Viun3g05651 654 SMART hat_new_1 477 509 IPR003107 GO:0006396
Viun3g05651 654 SMART hat_new_1 406 438 IPR003107 GO:0006396
Viun3g05651 654 SMART hat_new_1 201 234 IPR003107 GO:0006396
Viun3g05651 654 SMART hat_new_1 440 475 IPR003107 GO:0006396
Viun3g05651 654 SMART hat_new_1 270 302 IPR003107 GO:0006396
Viun3g05651 654 ProSiteProfiles TPR repeat profile. 324 357 IPR019734 GO:0005515
Viun3g05651 654 MobiDBLite consensus disorder prediction 582 596 - -
Viun3g05651 654 MobiDBLite consensus disorder prediction 65 117 - -
Viun3g05651 654 Pfam Tetratricopeptide repeat 428 458 IPR019734 GO:0005515
Viun3g05651 654 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 26 643 IPR044624 GO:0003729|GO:0006397
Viun3g05651 654 FunFam Uncharacterized protein 137 394 - -
Viun3g05651 654 FunFam PsbB mRNA maturation factor Mbb1 395 543 - -
Viun3g05651 654 ProSiteProfiles TPR repeat profile. 426 459 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05651 - - vun:114175850 1264.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05651 3 62094468 62097831 Viun3g05651 3 62094468 62097831 ECH