Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05637 ATGGCGGCAGCCACCGACAAAAACAACATGGAACGCTTCGACGTCGTATCGGACGTGGCGGACCACTACTTCATATTACCAAATCAGGACTCAGAAGGCCTCAGCAGAGTAGGGAGTGACGTGTACAAGAAGATAATGAGAGAGTGGAAAATCCTCGCCCGCAGCCTCCCCGATTCCATATACGTTCGCGTATACGAGAAACGCATCGATTTGCTCCGAGCAGTCATCGTGGGCGCCGCCGGCACCCCCTACCACGACGGTCTCTTCTTTTTCGACATGGCGTTCCCACCTGATTACCCGGCCAGCCCGCCGGATGTCCATTACCGCTCCTACGGGTACGCCATCAACCCGAACTTGTACAGCGACGGCCACGTGTGCTTGAGCCTGATCAACACGTGGCTCGGGAGAAAACACGAGAGGTGGGAGCCAGCTCGCTCCACCGTGCTGCAGTTGTTACTCTCGATCCAAGCGCTTGTCCTAAACGAGAAGCCGTTTTTCAACGACGTTTGGTCGGAGTTTTTCCCGCTCGGACGCTTCTTCTTGATTGATAGGTCGCAGGCTTACAACGAAGTCGTTTTCGCTCTCAACTGCAGGACCATGCTTTGCCAGCTACGCCACCCGCCGCGGAACTTCCAAACCTTCGTCGTTGCCCATTTCCGCGACCGGGCGCGTGCCATTCTGAGCGCGTGCGACGACTACGCGAACGGGCGCGCTAGAGTTGGGAATTACGGTGAAGCCGGCGAGGGTTGGAAGTCGAAGGTGAGGGTTTCGGCGAAACTGAGAGAGACGTTGGTTATGTTGTATCCTCAACTTTTTGAGGCATTTGTGTTGAATGGTGCGTTTTTGGGTTGTGATGAGGAACGGTTGAGGATGGAAAAGAGAGATGGGTTGTGCAAAAGTAATGTTACTAGGAGAAAGTACAGGGTAATTATGGGGAAGGTGTTTGGGAGAATAAAGAGCATTTATAATTCAACGTTTAAGACTAGTCACAAAAGTTGA 999 0.5305 MAAATDKNNMERFDVVSDVADHYFILPNQDSEGLSRVGSDVYKKIMREWKILARSLPDSIYVRVYEKRIDLLRAVIVGAAGTPYHDGLFFFDMAFPPDYPASPPDVHYRSYGYAINPNLYSDGHVCLSLINTWLGRKHERWEPARSTVLQLLLSIQALVLNEKPFFNDVWSEFFPLGRFFLIDRSQAYNEVVFALNCRTMLCQLRHPPRNFQTFVVAHFRDRARAILSACDDYANGRARVGNYGEAGEGWKSKVRVSAKLRETLVMLYPQLFEAFVLNGAFLGCDEERLRMEKRDGLCKSNVTRRKYRVIMGKVFGRIKSIYNSTFKTSHKS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05637 332 Gene3D Ubiquitin Conjugating Enzyme 1 273 IPR016135 -
Viun3g05637 332 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 40 201 IPR000608 -
Viun3g05637 332 CDD UBCc 42 192 IPR000608 -
Viun3g05637 332 FunFam Putative ubiquitin-conjugating enzyme E2 38 2 278 - -
Viun3g05637 332 Pfam Ubiquitin-conjugating enzyme 45 161 IPR000608 -
Viun3g05637 332 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 8 276 - -
Viun3g05637 332 SMART ubc_7 43 201 - -
Viun3g05637 332 SUPERFAMILY UBC-like 37 208 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05637 Viun-Chr3 62022646 62023644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05637 12 275 Miscellaneous Gene Families AT2G33770 47.348 2.00e-69 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05637 K10581 - gmx:100811389 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05637 3 62022646 62023644 Viun3g05637 3 62022646 62023644 ECH