Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05613 ATGACGTTGGTCGCGCTCTTCCTCACCGCCACCAAGCTCGCCGGAGCTCTCTTTACTCTTACCGTCGCCGCCAACGCCTTCTCCTACTCCCGCTTCCGCAAGAACAACCTCCGCCGATTCCGCTCCCCTATCGACGAATCCTCCGACACTCTCGCTGACTTTAACATCGCCGAAGAAGAGTTTTTCTTTGGTTTGGCTACTGCACCGGCTCATGTCGAGGACAGGCTTGATGATGCTTGGATCCAGTTTGCTGAGGAAAAGAGTGGTGACTCCGAGGGGAGGCAGACAGTGGATGCTGTTATGGGTTCTGCTTCTGGCGACGGTGGTTCCCAGCGGGCCGTGACGTCTCCGCCGGGCAGGAAGCCTCTTAAGTTGGCTATGGAAGCCATGATTAGGGGATTTGACAAGTACTTGGAAGTGGAAGGAAAAGAAGGGGGAGAAGAACCTCGTCCTAATGTAACTGCTTGGCATAATGTTCCACGCCCGGAGGAGAGGTTAAGATTTTGGTCTGATCCTGAAACAGAAATAAATTTGGCCAAGGATACTGGTGTTACCGTTTTTCGCATGGGAATAGATTGGACAAGAATCATGCCAGTGGAGCCAGTAAACAGCCTTAATGAATCTGTTAACTATGCTGCGTTGGAACGGTATAAGTGGATTATCAATAAGGTTCGATCATATGGAATGAAGGTGATGCTTACTCTTTTCCATCACTCACTTCCACCCTGGGCTGGTGAATATGGCGGTTGGAAGCTGGAAAAGACAGTGGATTATTTCATGGACTTTACCAGGCTTGTTGTAGACAGTGTCTCAGATTTGGTAGACTATTGGGTAACATTTAATGAGCCCCATGTCTTCTGTATGCTTACTTACTGTGCTGGTGCCTGGCCTGGAGGTCATCCTGATATGCTTGAGGTCGCAACCTCAGCACTTCCAACTGGTGTTTTTCAGCAGGCCATGCATTGGATGTCTGTTGCACACTCAAAGGCATATGATTACATCCACGGACAAAGTAACCCATTAAATTCAATAGTTGGTGTAGCACATCATGTGTCATTTATGCGACCCTATGGTTTGTATGACATTGCTGCTGTGTCACTGGCTAATTCATTGACTCTCTTCCCATACATTGATGGAATATCTGAAAAGCTGGACTATATAGGCATAAACTACTATGGGCAGGAAGTGGTTTCGGGTGCAGGCCTGAAGCTTGTGGAAAATGACGAGTATAGTGAATCTGGTCGTGGGGTATACCCTGATGGCTTATACCGCATGTTGCTTCAGTTCCATGAAAGATACAGACATCTAAAAATTCCCTTCATCATTACTGAAAATGGGGTTTCGGATGAGACAGATTTGATCCGACGGCCATATCTCTTGGAGCATTTGCTAGCTGTTTATGCTGCCATAAAAATGGGTGTACGTGTACTTGGTTACCTGTTCTGGACTATTTCTGATAACTGGGAGTGGGCCGATGGATATGGTCCCAAGTTCGGACTTGTTGCAGTTGACAGGGCAAATAATCTTGCACGGATCCCTCGCCCCTCTTACCATCTATTTTCTAAAATTGTGAACACGGGCAAAGTTACACGTGAAGATCGTGAAAGAGCATGGGATGAACTCCAAAAAGCTGCCAAAGAGAAGAAAACGAGACCATTTTATCGGGCTGTGAATAAACACCGTTTAATGTATGCAGGTGGACTTGATGAGCCTGTACAGCGACCTTATATCGAACGAGATTGGCGGTTTGGTCATTACCAGATGGAAGGACTTCAAGATCACTTGAGCCGCTTCTCAAGATTCATCATTCGACCCTTCTCCACCAAAAGGAAAACAAAATCTCAAGAGAAAAATCCCAAATTAATTCTTCAGCCTCTTGAAACTTAA 1887 0.4648 MTLVALFLTATKLAGALFTLTVAANAFSYSRFRKNNLRRFRSPIDESSDTLADFNIAEEEFFFGLATAPAHVEDRLDDAWIQFAEEKSGDSEGRQTVDAVMGSASGDGGSQRAVTSPPGRKPLKLAMEAMIRGFDKYLEVEGKEGGEEPRPNVTAWHNVPRPEERLRFWSDPETEINLAKDTGVTVFRMGIDWTRIMPVEPVNSLNESVNYAALERYKWIINKVRSYGMKVMLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRLVVDSVSDLVDYWVTFNEPHVFCMLTYCAGAWPGGHPDMLEVATSALPTGVFQQAMHWMSVAHSKAYDYIHGQSNPLNSIVGVAHHVSFMRPYGLYDIAAVSLANSLTLFPYIDGISEKLDYIGINYYGQEVVSGAGLKLVENDEYSESGRGVYPDGLYRMLLQFHERYRHLKIPFIITENGVSDETDLIRRPYLLEHLLAVYAAIKMGVRVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFSKIVNTGKVTREDRERAWDELQKAAKEKKTRPFYRAVNKHRLMYAGGLDEPVQRPYIERDWRFGHYQMEGLQDHLSRFSRFIIRPFSTKRKTKSQEKNPKLILQPLET 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05613 628 ProSitePatterns Glycosyl hydrolases family 1 active site. 440 448 IPR018120 -
Viun3g05613 628 PRINTS Glycosyl hydrolase family 1 signature 452 463 IPR001360 GO:0004553|GO:0005975
Viun3g05613 628 PRINTS Glycosyl hydrolase family 1 signature 497 509 IPR001360 GO:0004553|GO:0005975
Viun3g05613 628 PRINTS Glycosyl hydrolase family 1 signature 440 448 IPR001360 GO:0004553|GO:0005975
Viun3g05613 628 PRINTS Glycosyl hydrolase family 1 signature 473 490 IPR001360 GO:0004553|GO:0005975
Viun3g05613 628 PRINTS Glycosyl hydrolase family 1 signature 383 397 IPR001360 GO:0004553|GO:0005975
Viun3g05613 628 MobiDBLite consensus disorder prediction 87 119 - -
Viun3g05613 628 Pfam Glycosyl hydrolase family 1 380 526 IPR001360 GO:0004553|GO:0005975
Viun3g05613 628 Pfam Glycosyl hydrolase family 1 173 358 IPR001360 GO:0004553|GO:0005975
Viun3g05613 628 PANTHER GLYCOSYL HYDROLASE 75 373 IPR001360 GO:0004553|GO:0005975
Viun3g05613 628 Gene3D Glycosidases 138 538 - -
Viun3g05613 628 MobiDBLite consensus disorder prediction 609 628 - -
Viun3g05613 628 SUPERFAMILY (Trans)glycosidases 155 532 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05613 Viun-Chr3 61859183 61863472 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05613 6 603 Glycoside Hydrolase AT3G06510 64.163 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05613 K21362 - gmx:100792401 1179.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05613 3 61859183 61863472 Viun3g05613 3 61859183 61863472 ECH