Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05607 ATGTTCTTCAGCGGCGATCCTTCTACGCGGAAGCGTGTCGATTTGGGTGGTCGCAGCTCAAAGGAAAGGGACCGGAAGAACCTTCTAGAACAGACGCGAGTTGAAAGAAACCGGCGCTTGTGGTTGCGCCAGCAGAACTCTGCCGTACTCAAAATTCAGAAATGCTTCAGAGGAAGAAAAGCTGTCAAAACTGAACAATCTAAGTTGCGAGAGCAGTTCTATGAAGTCTATGGGAAATATTGCCATAATGTGGACAGGAATTCTTTTGGTCCAGATTCTGATTTCCTCTGCCAGTTCCTCTATTTCTTTAAGGCAGACGATAGTGATGATTTTTTAGTTCTTGTTCAAATTTGCCGGTTGCTTTGGTGGTTTGTTCAAAATAATGGGGACGTTGTGAACATTTTTGCAGGGGTGGATTACTCTTCCACCCGTGCTTTGGTGAACTACCGAGTGAAGCGATTTGTACAAGCTTGTATTCATGCTTTGCATCGGAATAGAAATCAGCTAAAAGGGCAGCTTTTGTTGACTCCTGAGGAATTGAATGTATCAGCTGTTCCTTTATTGGAGGTTTTAGTATTGTTAATTGATTCCAAATTGCCATGGAGCTGTAAGATAGTAGAATATCTCTTTCGAAACAATGCACTTGGCCTACTAAGAGAGATCATTCTTACAGGGAAGGGTAATGATGCAGAGAATTATTTTTCCATTGGCAAGGGTTCATCATTGGAGCGTGTGCTTATGGCTGTAGTACGTCACGCTGGTCAGGAGCCATGTATCTGTTCACATATTAATCCAACATATAGTTTTGCGTCTCAAATCATCACCATTCCTTTTTTGTGGCATCTTTTCCCTAATTTACAACAGATTTTTGCCGCAGAGGACCTGAGCCAATTTTACATGCATCAAATGGCAAAGTTTGGGCAAAATCTGATCAATTTTCTACCTAAGGATATATCAAATGAATTTCCTAGCCATGCCTGTATGCTTGGAAATGTATTAGAAACTGCTGGAGTTGCTTTGTCTCATCCTGTCTGTTCATTTGATATGGCAATAGACCTTGCGGGTGTCACTACAGTTTTGCTGGAGGCACTCCCATCTGCAAAAACTTTCAATGGTTCTATGAGCGCTGAAGATGATATGACTGGAGATGAAGTCATGGAAATAGCTTTAGATAGGAAATTGGAGCAGCAAATTAATAATGCCGTAAATCCTCGCTTCCTTCTACAACTGACAAACATACTATTTAAAGAGATTTCATCTGTCAATGATTCAGATTATGGACCCAATGATAGAGAAGTTACTGCTGTTGATGCGGTTTGTGGGTTTTTGCATGTTACCTTCAGCAAGCTGCCACTTGAACGGATTATGACTGTGCTTGCTTACAGAACTGAACTTGTTATTACCCTTTGGAACTTTACAAAGAAGTGTCATGAGAACCAAAAGTGGTCATCACTCACCTCAAATGATGCACCTGGCTGGCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATTGTTGATAATGAAGAATTTTATGAGCAGGAGAAACCGCTGTCACTGAAGGATATTAGGACCCTCATCATTATATTGAGACAGGTTCTGTGGCAGCTACTGTGGGTGAATCATACTACATCAGCTAATTCAGTAAAATCAGTTCCGAATAGTTCAGTTAGAAAGGGGCAGTTCGTTCAGGCCATTCAACAGAGGGTTAGCATTGCAGTCTCTGAGCTTCTCTCCCAGCTGCAAGATTGGAACAATAGACGGCAGTTTACATCCCCCAGTAACTTCCATGCTGATGGTGTGAATGACCTATTTATCTCTCAGGCTTTAATAGAAAATACGCGAGCAAATGAAATATTGAAACAGGCCCCTTTCTTGATACCATTTACTAGCAGGGTTAAAGTATACTCTTCTCAACTAGCTGCTGTTAGGCAAAGGCATGGATCTCAGGCTGTATTTAGTAGGAATCGGTTCAGAATAAAACGAGACCGTATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGACAGAAGATAGTCTTCGAGGATTGATCCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATTGATGGCGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGATCCGGAATGATACATGAACAACACTTCCAATTTTTCCACTTCCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGTACAACTATTTGAATGACTTGCCCTCCTTGGACCCGGAATTGTATCGCCATCTCATTTTCCTCAAGCATTATAAGGGAGACATTTCGGAATTGGAACTATACTTTGTTATAGTAAATAATGAATATGGAGAACAAACAGAGGAGGAACTGCTTCCTGGGGGAAGAAACCTACGTGTCACTAATGAGAATGTTATTACTTTTATTCATCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGCCAACAGAGTTCGCATTTCTTGAGGGGATTTGAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAACATGAACTTCAGCTTCTGATATCAGGTTCAGTTGACAGCTTGGATATTGATGATTTGCGGCTGCACACCAACTATGCAGGAGGTTATAATAGTGACCACTATGTTATTGAGATGTTTTGGGAAGTTCTTAAAGGCTTTTCATTGGAAAACAGGAAGAAATTTTTGAAGTTCGTGACAGGTTGCTCTCGTGGGCCATTGCTTGGTTTCAGAAATCTTGAACCTTTGTTTTGCATTCAAAGTAATGCTGCGGAGGAATCACTTGACCGATTACCAACATCGGCTACTTGTATGAATCTACTGAAGCTTCCGCCTTATACAAGTAAGGAGCAATTGGAAACCAAACTACTGTATGCCATAAATGCCGATGCTGGCTTTGATTTAAGTTAG 3063 0.4078 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWLRQQNSAVLKIQKCFRGRKAVKTEQSKLREQFYEVYGKYCHNVDRNSFGPDSDFLCQFLYFFKADDSDDFLVLVQICRLLWWFVQNNGDVVNIFAGVDYSSTRALVNYRVKRFVQACIHALHRNRNQLKGQLLLTPEELNVSAVPLLEVLVLLIDSKLPWSCKIVEYLFRNNALGLLREIILTGKGNDAENYFSIGKGSSLERVLMAVVRHAGQEPCICSHINPTYSFASQIITIPFLWHLFPNLQQIFAAEDLSQFYMHQMAKFGQNLINFLPKDISNEFPSHACMLGNVLETAGVALSHPVCSFDMAIDLAGVTTVLLEALPSAKTFNGSMSAEDDMTGDEVMEIALDRKLEQQINNAVNPRFLLQLTNILFKEISSVNDSDYGPNDREVTAVDAVCGFLHVTFSKLPLERIMTVLAYRTELVITLWNFTKKCHENQKWSSLTSNDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDIRTLIIILRQVLWQLLWVNHTTSANSVKSVPNSSVRKGQFVQAIQQRVSIAVSELLSQLQDWNNRRQFTSPSNFHADGVNDLFISQALIENTRANEILKQAPFLIPFTSRVKVYSSQLAAVRQRHGSQAVFSRNRFRIKRDRILEDAYNQMSQLTEDSLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYKGDISELELYFVIVNNEYGEQTEEELLPGGRNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFEQLIQKDWIDMFNEHELQLLISGSVDSLDIDDLRLHTNYAGGYNSDHYVIEMFWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRNLEPLFCIQSNAAEESLDRLPTSATCMNLLKLPPYTSKEQLETKLLYAINADAGFDLS 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05607 1020 FunFam Putative Ubiquitin-protein ligase E3C 787 866 - -
Viun3g05607 1020 Gene3D Hect, E3 ligase catalytic domain 905 1019 - -
Viun3g05607 1020 SUPERFAMILY Hect, E3 ligase catalytic domain 651 1012 IPR035983 GO:0004842
Viun3g05607 1020 Gene3D Hect, E3 ligase catalytic domains 663 901 - -
Viun3g05607 1020 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 9 1020 IPR044611 GO:0000209|GO:0061630
Viun3g05607 1020 MobiDBLite consensus disorder prediction 11 28 - -
Viun3g05607 1020 Gene3D Hect, E3 ligase catalytic domain 787 866 - -
Viun3g05607 1020 FunFam Putative Ubiquitin-protein ligase E3C 905 1019 - -
Viun3g05607 1020 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Viun3g05607 1020 SMART hect_3 680 1020 IPR000569 GO:0004842
Viun3g05607 1020 Pfam HECT-domain (ubiquitin-transferase) 718 1020 IPR000569 GO:0004842
Viun3g05607 1020 CDD HECTc 661 1018 IPR000569 GO:0004842
Viun3g05607 1020 MobiDBLite consensus disorder prediction 1 28 - -
Viun3g05607 1020 ProSiteProfiles HECT domain profile. 682 1020 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05607 Viun-Chr3 61781841 61799714 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05607 K10589 - gmx:100789933 1853.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05607 3 61781841 61799714 Viun3g05607 3 61781841 61799714 ECH
Viun3g05607 3 61781841 61799714 Viun6g01894 6 25922141 25945866 PCT