Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05492 ATGGCTACCGATCGTTTGACCCGTGTCCACAGTCTCCGTGAGAGGCTCGATGAAACCCTGTCTGCCAACAGGAACGAAATTCTGGCCCTTCTGTCAAGGATCGAAGGCAAGGGCAAGGGGATCTTGCAACACCATCAGGTCATTGCCGAGTTCGAGGAAATCCCCGAGGAGAGCAGACAGAAGCTTACCGATGGTGCTTTTGGAGAAGTCTTGAGATCTACTCAGGAAGCCATAGTTTTGCCACCATGGGTTGCTCTGGCCGTTCGTCCAAGGCCTGGTGTGTGGGAGTATCTGAGAGTGAATGTGCACGCTCTTGTTGTTGAGGTGTTGCAACCTGCTGAGTACCTGCGCTTCAAGGAGGAACTTGTTGATGGAAGTTCTAATGGCAACTTCGTGCTTGAGTTGGACTTTGAACCCTTTACCGCATCCTTCCCTCGCCCAACTCTTAACAAGTCAATTGGAAATGGCGTGCAGTTCCTCAACCGTCACCTTTCTGCCAAACTCTTCCATGACAAGGAGAGCCTGCACCCGCTTTTGGAATTCCTCAGGCTTCACAGCGTCAAGGGAAAGACTTTGATGTTGAATGACAGAATTCAAAACCCGGATGCTCTTCAACATGTTCTGAGGAAAGCTGAGGAGTATCTGGGCACGGTGCCTCCTGAAACCCCCTACTCAGCATTTGAGCACAAGTTCCAGGAGATTGGTTTGGAGAGAGGGTGGGGTGACAACGCTGAGCGTGTGCTGGAGTCAATTCAACTTCTCTTGGATCTTCTTGAGGCCCCTGATCCGTGCACCCTTGAGACTTTCCTCGGAAGAATCCCTATGGTGTTTAATGTTGTTATTCTTTCTCCCCACGGTTACTTTGCCCAAGATAATGTCTTGGGATACCCCGACACTGGTGGTCAGGTTGTTTACATCTTGGATCAAGTTCGTGCTTTGGAGAATGAGATGCTCCATCGCATTAAGCAACAAGGATTGGACATTGTTCCTCGTATTCTCATCATCACCCGTCTTCTCCCAGATGCAGTAGGTACTACTTGCGGCCAACGTCTTGAGAAGGTGTTTGGAACCGAACACTCTCACATTCTTCGAGTTCCCTTTAGAACTGAGAAGGGAATTGTTCGCCAGTGGATCTCAAGATTCGAAGTCTGGCCATACTTGGAAACTTACACCGAGGATGTTGCTCATGAGCTTGCCAAAGAGTTGCAGGGCAAGCCAGATCTGATCGTTGGAAACTACAGTGATGGAAACATTGTTGCCTCTTTGTTGGCACATAAATTAGGTGTCACTCAGTGTACCATTGCTCATGCACTTGAGAAGACCAAATACCCTGAATCCGACATTTACTGGAAAAAACTGGAAGAGAGATACCACTTCTCTTGCCAATTCACAGCTGATCTTTTTGCCATGAACCACACTGATTTCATTATCACCAGTACATTCCAAGAGATTGCTGGAAGCAAGGACACTGTTGGACAGTATGAGTCTCACACAGCCTTCACCCTTCCTGGACTCTACCGTGTTGTGCACGGTATCGATGTGTTCGATCCAAAATTCAACATTGTCTCTCCCGGAGCCGATCAAACCATTTACTTCCCCCCAACCGAAACTAGCCGCAGGTTGACCTCTTTCCACCCCGAAATCGAAGAGCTTCTCTACAGTTCAGTCGAGAACGAAGAACACATATGTGTGCTGAAGGACCGCACGAAGCCGATTATCTTCACGATGGCGAGGTTGGACCGCGTGAAGAACATCACAGGACTGGTGGAGTGGTACGGTAAGAACGCGAAGCTGAGGGAGCTGGTGAACCTTGTGGTGGTGGCCGGAGACAGGAGGAAGGAGTCGAAGGACCTGGAAGAGAAGGCGGAGATGAAGAAGATGTATGGCCTGATCGAGACGTACAAGTTGAACGGACAATTCAGATGGATATCGTCTCAGATGAACCGTGTGAGGAACGGAGAATTGTACCGTGTGATCTGTGACACGAGGGGTGCGTTTGTTCAGCCTGCGGTGTATGAGGCATTTGGTTTGACAGTGGTGGAGGCCATGACTTGTGGGTTGCCAACATTCGCAACATGCAATGGTGGACCTGCTGAGATCATTGTTCATGGAAAATCTGGGTTCCACATTGATCCTTACCACGGTGACCGTGCTGCTGATCTCCTTGTTGACTTCTTCGAGAAGTGCAAGGTTGACCCATCTCACTGGGACAAAATCTCTCAAGCTGGTCTCCAACGTATTGAAGAGAAGTACACATGGCAGATTTACTCCCAGAGGCTTCTCACACTCACTGGTGTTTATGGTTTCTGGAAGCATGTTTCTAACCTCGATCGCCGTGAGAGTCGCCGCTATCTTGAGATGTTCTATGCTCTCAAGTACCGCAAATTGGCTGAGTCTGTGCCCCTTGCTGTTGAGTAA 2418 0.4921 MATDRLTRVHSLRERLDETLSANRNEILALLSRIEGKGKGILQHHQVIAEFEEIPEESRQKLTDGAFGEVLRSTQEAIVLPPWVALAVRPRPGVWEYLRVNVHALVVEVLQPAEYLRFKEELVDGSSNGNFVLELDFEPFTASFPRPTLNKSIGNGVQFLNRHLSAKLFHDKESLHPLLEFLRLHSVKGKTLMLNDRIQNPDALQHVLRKAEEYLGTVPPETPYSAFEHKFQEIGLERGWGDNAERVLESIQLLLDLLEAPDPCTLETFLGRIPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLHRIKQQGLDIVPRILIITRLLPDAVGTTCGQRLEKVFGTEHSHILRVPFRTEKGIVRQWISRFEVWPYLETYTEDVAHELAKELQGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKLEERYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADQTIYFPPTETSRRLTSFHPEIEELLYSSVENEEHICVLKDRTKPIIFTMARLDRVKNITGLVEWYGKNAKLRELVNLVVVAGDRRKESKDLEEKAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTRGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYHGDRAADLLVDFFEKCKVDPSHWDKISQAGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRRESRRYLEMFYALKYRKLAESVPLAVE 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05492 805 Gene3D Glycogen Phosphorylase B; 280 796 - -
Viun3g05492 805 Pfam Glycosyl transferases group 1 564 738 IPR001296 GO:0016757
Viun3g05492 805 Gene3D Glycogen Phosphorylase B; 527 753 - -
Viun3g05492 805 FunFam Sucrose synthase 146 275 - -
Viun3g05492 805 Pfam Sucrose synthase 8 553 IPR000368 GO:0005985|GO:0016157
Viun3g05492 805 Gene3D - 25 145 - -
Viun3g05492 805 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 295 763 - -
Viun3g05492 805 NCBIfam sucrose synthase 24 802 IPR012820 GO:0005985|GO:0016157
Viun3g05492 805 Gene3D - 146 275 - -
Viun3g05492 805 PANTHER - 7 803 IPR012820 GO:0005985|GO:0016157
Viun3g05492 805 FunFam Sucrose synthase 11 145 - -
Viun3g05492 805 FunFam Sucrose synthase 280 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05492 Viun-Chr3 60836145 60841329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05492 6 805 Glycosyltransferase AT3G43190 84.875 0.0 1426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05492 K00695 - gmx:547508 1596.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05492 3 60836145 60841329 Viun3g05492 3 60836145 60841329 ECH
Viun3g05492 3 60836145 60841329 Viun9g00528 9 3861340 3866153 PCT