Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04759 ATGGGTGGCGGAGGTCTTGAAACGAATCGTTTAACAAATGGGGAAGCTGAGAACGGTCTTCACAAACAGGTTTCTCCAGCTTCTGCTGCACTCGCCAACTCGCTTTCTGATGCCAATGATGCAGTTGCTGACCCTCATGTTCCTGCCAAGAGGGCCAGGCTGCAGAAGGACTTGACGTTTCAGGATATGTATCAAAATGAGGGCGTGTTTGATGAGGATGACGAGGAGGACAGTGATTGGGAGCCGTTTCAGTTACACAAGTGTGTTGATTTTGAAATCAAAAAGTGGTGCTGCAGAAATTGTACTATGATTAACTTGGATTGCAATGACTGTTGCTATATATGTGGGGAGCACAGGGAGTCTAAAATCCTCAGCCATGGGTTTTTTGCATCTCCTTTAGCTCAAGACGAGGATCTGATTGAAGTCCAGGGAGATGTAAAAGGACTGAAAGATGTTGGCTCACAGAAATCAGTGGCAAACAGTTCTACAGCGATTGGCTTTGATGAGAGAATGTTGTTGCATGCAGAAGTTGATAAGAAATCATCTCCACATCCTGAGAGGCCAGATCGTCTTCAAGCCATTGCTGCTAGTCTTGCTAGAGCTGGCATATTTCCCGGAAAATGCTATGCAATTCCTGCTAGGGAAATCACACCAGAAGAACTTATTGCGGTTCATTCTTTGGAGCATATTGAGTCTGTGGAAGTTACAACTGAATCACTGTCTAGTTATTTCACTCCAGACACATATGCCAATCAGCATTCAGCACTTGCTGCTAGGTTGGCTGCTGGGTTATGTGCTGATCTGGCATCTGCAATTGTTTCCGGACGTGCAAAAAATGGATTCGCTTTGGTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACAGGCAATGGGGTTCTGCCTTCACAATAATGCTGCTGTGGCAGCATTGGCTGCTCAAGCTGCAGGGGCTAGGAAAGTGCTAATTTTAGATTGGGATGTTCATCATGGAAACGGGACCCAAGAAATATTTGAACAGAACAAATCAGTCTTGTATATATCATTGCATAGACACGAGGGTGGACAATTTTATCCTGGTACTGGAGCTGCTGAAGAGGTTGGTAGTATGGGCGCTGAAGGGTACTGTGTGAATATTCCATGGAGTCGAGGAGGAGTTGGTGACAATGACTACAATTTTGCATTTCAGCATGTTGTCCTTCCTATAGCTTCTGAGTTTAATCCAGATTTTATCATAGTATCCGCTGGATTTGATGCTGCAAGAGGCGATCCCCTAGGATGTTGCGATATAACTCCCTCTGGCTATGCACACATGACGCGTATGTTGAATACCCTCTCTGGTGGAAAATTGCTTGTTATTCTTGAGGGGGGCTATAATCTTCGATCTATATCATCTTCCGCAACTGCAGTAATCAAGGTATTACTGGGTGAGAGTCCTGGATGTGAACTGGAAAATAGTTTCCCTTCCAAAGCTGGCCTTCTAACCGTTCTGGAAGTCCTCAAAATTCAGATGAAATTTTGGCTTTCCTTGGGTTCGATTTTTGTGAATTTGGAGTCTCAGTGGAGGATGTACTGTTTCGAAAAAAAAAGAAAACAGATTAAGAAACGACGCCGAATTCTGATTCCAATGTGGTGGAGGTGGGGACGAAGAAGTTCATTGTTCTATTTTATGAACGGCCATCTTCATAAAAAATCAAAGTGA 1698 0.4423 MGGGGLETNRLTNGEAENGLHKQVSPASAALANSLSDANDAVADPHVPAKRARLQKDLTFQDMYQNEGVFDEDDEEDSDWEPFQLHKCVDFEIKKWCCRNCTMINLDCNDCCYICGEHRESKILSHGFFASPLAQDEDLIEVQGDVKGLKDVGSQKSVANSSTAIGFDERMLLHAEVDKKSSPHPERPDRLQAIAASLARAGIFPGKCYAIPAREITPEELIAVHSLEHIESVEVTTESLSSYFTPDTYANQHSALAARLAAGLCADLASAIVSGRAKNGFALVRPPGHHAGVRQAMGFCLHNNAAVAALAAQAAGARKVLILDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGQFYPGTGAAEEVGSMGAEGYCVNIPWSRGGVGDNDYNFAFQHVVLPIASEFNPDFIIVSAGFDAARGDPLGCCDITPSGYAHMTRMLNTLSGGKLLVILEGGYNLRSISSSATAVIKVLLGESPGCELENSFPSKAGLLTVLEVLKIQMKFWLSLGSIFVNLESQWRMYCFEKKRKQIKKRRRILIPMWWRWGRRSSLFYFMNGHLHKKSK 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04759 565 PANTHER HISTONE DEACETYLASE 9-RELATED 135 511 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
Viun3g04759 565 PRINTS Histone deacetylase superfamily signature 286 309 IPR000286 -
Viun3g04759 565 PRINTS Histone deacetylase superfamily signature 407 417 IPR000286 -
Viun3g04759 565 PRINTS Histone deacetylase superfamily signature 319 334 IPR000286 -
Viun3g04759 565 MobiDBLite consensus disorder prediction 1 27 - -
Viun3g04759 565 Pfam Histone deacetylase domain 184 472 IPR023801 -
Viun3g04759 565 SUPERFAMILY Arginase/deacetylase 160 488 IPR023696 -
Viun3g04759 565 CDD HDAC_classII 184 474 - -
Viun3g04759 565 Gene3D Histone deacetylase domain 160 512 IPR037138 -
Viun3g04759 565 FunFam Histone deacetylase 15 156 530 - -
Viun3g04759 565 ProSitePatterns Zinc finger RanBP2-type signature. 96 115 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04759 Viun-Chr3 54951717 54959956 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04759 - - gmx:100804724 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04759 3 54951717 54959956 Viun3g04759 3 54951717 54959956 ECH