Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04749 ATGGCTGAAAATGTCGATCTAACCAATAAGCTCCCTGAGCTCAAATTAGATTCTAAGCAAGCACAAGGGTTTCTATCATTTTTCAAAACCCTACCTGATGATCCAAGGGCTATACGACTTTTTGATCGTAGGGACTATTATACTGCCCATGGCGACAATGCAACTTTCATTGCAAAGACCTACTACCACACTACGACTGCCATGCGACAACTGGGCAATGGATCAAACGCTCTTTCCAGTGTTACTGTCAGCAGAAACATGTTTGAAACAATTGCTCGTGATCTCCTTTTGGATAGAACAGATCATTCTCTTGAGCTCTACGAAGGTAGTGGTTCTAATTGGAGACTGGTCAAAACTGGAACGCCTGGTAATATTGGTAGTTTTGAAGATGTTCTGTTTGCTAACAGTGAAATGCAAGATTCTCCTGTTATTGTTGCTTTGTCACTTAACTTCCGTGAAAATGGTTGCACCATTGGGTTAGGATTTGTTGATCTAACTAAGAGAGTGCTTGGGATGGCTGAATTCCTTGACAATCACTTCACAAATGTGGAATCAGCATTGGTTGCACTCGGCTGCAAAGAGTGTCTTCTGCCCATAGAGTCTGTCAAATCTACTGAATACAGAATGTTGTGTGATGTGTTGACTAAATGTGGTGTGATGTTAACTGAGAAAAAGAAATATGAATTTAAAGCCAGAGATCTGGTGCAGGATCTTGGTAGGCTTGTTAAAGGTCCTATCGAACCAGTTCGAGATTTTGTGTCTGGATTTGAATATGCACCTGGTGCTCTGGGGGCATTACTATCTTATGCAGAGTTACTGGCAGATGAAAGCAATTATGAAAACTATACCCTTCGTAGGTACAATCTTGACAGCTACATGAGGTTAGATTCTGCAGCCATGAGAGCACTTAATGTCCTGGAAAGCAAAACTGATGCAAACAAAAATTTCAGTTTGTTTGGTCTCATGAATAGGACTTGTACTGCTGGAATGGGAAAACGGTTATTGCACATCTGGCTTAAACAGCCATTAGTAGATGTGGCAGAAATTAATTCTAGATTGGACATAGTACAAGCATTTGTAGAGGACACTGTGCTTCGCCAAGATCTGAGGCAGCATCTGAAAAGAATATCAGACATTGAGCGACTGGTGCACAATCTGCAGAAGCGACGAGCTGGTCTGCAACATATTGTTAAACTTTACCAGTCTAGTATTCGACTACCTTTCATTAAAAGTGCTTTGGAAATATATGATGGGCAATTTTCCTCAGTGATGAGAAGTAGGTATTTGGAACCTCTTCATTTATGGACTGATGATGAGCACCTGAACAAATTCATTGGGCTTGTAGAAGCTTCTGTTGACCTTGACCAACTGGAGAACAGGGAATACATGATTTCTCCAAGCTATGACTCTACACTTGCTAACCTAAAGGAACAGCGAGAATTACTAGAGAGCCAAATACATAACTTGCATAGACAAACTGCTGATGATCTTGATCTGCCTATAGATAAGGCATTAAAGTTAGACAAAGGCACACAATTTGGACACGTTTTCAGAATCACAAAGAAGGAAGAGCCAAAGATAAGGAAGAAGCTCAATACCCAGTTTATTGTACTGGAAACCCGTAAAGATGGAGTGAAATTTACCAACACGAAGCTCAAAAAACTAGGGGATCAGTATCAACAAATTCTTGAGGAGTACAAAAATTGTCAAAAGAAGTTAGTTGATAAGGTAGTTCAAACAGCGACAACTTTTTCTGAGGTGTTTGAATCTTTAGCTGAAATAATCTCTGAATTGGATGTATTACTGAGCTTTGCTGATTTAGCTTCTAGTTGCCCGACGCCCTACACAAGGCCTGATATCACTCCATCGGATGAAGGAGATATTATCTTAGAAGGCTGCAGACACCCTTGCGTGGAAGCCCAAGATTGGGTGAATTTTATACCAAATGATTGTAAGCTTGTCAGAGAAAAAACTTGGTTTCAAATAATAACGGGGCCTAACATGGGTGGTAAATCAACATTCATTCGGCAGGTGGGTGTGAATATTTTGATGGCACAAGTTGGTTCATTTGTTCCTTGTGACAAAGCCAGCATATCTGTTCGTGATTGTATTTTTGCCCGTGTGGGTGCTGGTGACTGCCAACTACGTGGTGTTTCTACCTTCATGCAAGAAATGCTTGAAACTGCATCAATATTAAAAGGAGCAACTGAAAAGTCTTTGATAATCATTGATGAGTTGGGGCGTGGGACATCAACCTATGATGGATTTGGTCTAGCTTGGGCCATTTGTGAGCATATTGTTGAAGTTATCAAAGCACCTACTTTGTTTGCCACCCACTTTCACGAGCTGACTGCTTTAGCCCTTGAAAATGTAAGCAACGATCCACAGAAGCAAATTGTTGGCGTGGCAAACTATCATGTTAGTGCGCATATTGACTCATCAACTCGAAAGCTAACTATGCTATATAAGGTTGAACCCGGAGCATGTGATCAGAGTTTTGGTATTCATGTTGCGGAGTTTGCTAACTTCCCTGAAAGTGTTGTTACCCTAGCTAGAGAAAAGGCGGCAGAATTAGAAGACTTTTCTCCCCCTGCAGCATCCCTAACTGATACTACACAGGAGGTGGGTTCTAAACGTAAGAGAGTTTTTGAATCCGATGACGTGTCTCAAGGGACTGCAAGGGCACGGCAATTTCTCGAAACATTTGTTGATTTGCCACTGGTGACCATGGACAAAATGCAAGCATTGCAAGAAGTAAGGAAGTTAACAGAAAATTTGGAGAAGGACGCCGAAAACTGTAATTGGCTGAAGCAATTCTTGTAA 2823 0.4116 MAENVDLTNKLPELKLDSKQAQGFLSFFKTLPDDPRAIRLFDRRDYYTAHGDNATFIAKTYYHTTTAMRQLGNGSNALSSVTVSRNMFETIARDLLLDRTDHSLELYEGSGSNWRLVKTGTPGNIGSFEDVLFANSEMQDSPVIVALSLNFRENGCTIGLGFVDLTKRVLGMAEFLDNHFTNVESALVALGCKECLLPIESVKSTEYRMLCDVLTKCGVMLTEKKKYEFKARDLVQDLGRLVKGPIEPVRDFVSGFEYAPGALGALLSYAELLADESNYENYTLRRYNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHIWLKQPLVDVAEINSRLDIVQAFVEDTVLRQDLRQHLKRISDIERLVHNLQKRRAGLQHIVKLYQSSIRLPFIKSALEIYDGQFSSVMRSRYLEPLHLWTDDEHLNKFIGLVEASVDLDQLENREYMISPSYDSTLANLKEQRELLESQIHNLHRQTADDLDLPIDKALKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIVLETRKDGVKFTNTKLKKLGDQYQQILEEYKNCQKKLVDKVVQTATTFSEVFESLAEIISELDVLLSFADLASSCPTPYTRPDITPSDEGDIILEGCRHPCVEAQDWVNFIPNDCKLVREKTWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALALENVSNDPQKQIVGVANYHVSAHIDSSTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPPAASLTDTTQEVGSKRKRVFESDDVSQGTARARQFLETFVDLPLVTMDKMQALQEVRKLTENLEKDAENCNWLKQFL 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04749 940 SMART mutATP5 658 856 IPR000432 GO:0005524|GO:0006298|GO:0030983
Viun3g04749 940 CDD ABC_MSH2_euk 629 859 IPR032642 GO:0005524
Viun3g04749 940 Pfam MutS domain II 143 282 IPR007860 GO:0005524|GO:0006298|GO:0030983
Viun3g04749 940 ProSitePatterns DNA mismatch repair proteins mutS family signature. 739 755 IPR000432 GO:0005524|GO:0006298|GO:0030983
Viun3g04749 940 SMART DNAend 313 641 IPR007696 GO:0005524|GO:0006298|GO:0030983
Viun3g04749 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 860 IPR027417 -
Viun3g04749 940 Gene3D - 293 521 - -
Viun3g04749 940 Gene3D - 522 615 - -
Viun3g04749 940 SUPERFAMILY DNA repair protein MutS, domain III 296 610 IPR036187 -
Viun3g04749 940 Gene3D - 616 937 IPR027417 -
Viun3g04749 940 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 81 862 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Viun3g04749 940 Coils Coil 472 492 - -
Viun3g04749 940 FunFam DNA mismatch repair protein MSH2 616 936 - -
Viun3g04749 940 FunFam DNA mismatch repair protein 122 290 - -
Viun3g04749 940 Pfam MutS domain I 23 128 IPR007695 GO:0005524|GO:0006298|GO:0030983
Viun3g04749 940 Pfam MutS domain III 299 605 IPR007696 GO:0005524|GO:0006298|GO:0030983
Viun3g04749 940 Pfam MutS family domain IV 468 565 IPR007861 GO:0005524|GO:0006298|GO:0030983
Viun3g04749 940 PIRSF MSH2 7 940 IPR011184 GO:0005524|GO:0006298|GO:0030983
Viun3g04749 940 Gene3D DNA repair protein MutS, domain I 7 121 IPR016151 GO:0005524|GO:0006298|GO:0030983
Viun3g04749 940 Coils Coil 552 572 - -
Viun3g04749 940 Pfam MutS domain V 661 859 IPR000432 GO:0005524|GO:0006298|GO:0030983
Viun3g04749 940 FunFam DNA mismatch repair protein 293 510 - -
Viun3g04749 940 FunFam DNA mismatch repair protein MSH2 512 615 - -
Viun3g04749 940 Gene3D MutS, connector domain 122 290 IPR036678 GO:0005524|GO:0006298|GO:0030983
Viun3g04749 940 Coils Coil 912 932 - -
Viun3g04749 940 Coils Coil 369 389 - -
Viun3g04749 940 FunFam DNA mismatch repair protein 7 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04749 Viun-Chr3 54918870 54927371 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04749 K08735 - gmx:100792272 1742.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04749 3 54918870 54927371 Viun3g04749 3 54918870 54927371 ECH