Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04662 ATGGCGTTCTTACCCAGTTTTGCTCCTTTTGTGTTTCTATTGCTTGTTATTGGTTGCACTGCAAGGCCTTTTTATCCTCTTCCCAACAAAGGTGATGGGGGAAGTAGGAAGCCCCTACAAACTTTTCGCCCATATAACATTGCACATCGCGGTTCAAATGGAGAGCTTCCTGAAGAAACTTCTGCTGCATATACGAAAGCTATTGAAGAAGGTGCAGACTTCATTGAAACTGATATCTTATCATCCAAAGATGGTGTTCTTATATGTTTCCATGATGTCAACCTTGATGATACTACTGACATTGCAAATCACGAGGAGTTTGCTGATCGTAAAAGAACGTATGAAGTCCAAGGGGAAAACATCACTGGGTTCTTTACTGTTGATTTCACATTAAAGGAGTTAAAGTCATTGAGGGTGAAACAGAGGTATAGATACAGGGATCAACAGTTCAATGGAAAGTTTCAAATCATCACTTTTGAAGAGTTCATTAACATAGCACTGGATGCACCAAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTATTTATCAATCAACATGTTAAATGGTCAGATGGCAAAATATTTGAGGACAAGTTTGTGGAGACACTTCAGAAATATGGGTTAAAGGGTTCCTACCTTTCAAAAGATTGGCTGAGACAACCAGTATTCATTCAGTCATTTGCTCCAACTTCACTCGTGTATATAGCAAATAAGACGGACTTGCCCAAAATTTTCTTAATTGACGATGTTGATATTCCAACGCAAGACACCAATCAGTCATACTGGGAGATTATATCTGATGAATACCTAAACTACATAAAGCAATATGTTGTGGGAATTGGACCATGGAAGGACACGTTGGTACCTGTGGTAAATAATTATGTGGCAACTCCTACTGATCTTGTTTCCAGGGCACATGCTCATAATCTGCAGGTGCATCCATATACTTACCGAAATGAGAACCTTTTTTTGCACTTCAACTTTAGTCAAGATCCGTACGTGGAGTATGATTACTGGATCAACAAGATAGGTGTTGATGGTCTGTTTACAGACTTCACTGGTAGCCTACATCGTTTTCAGGAATGGACCTCTAAACATCAAGACGATGATGATAACAACGCATCCAAGCTATTGCATAAAATTGCATTGTTGCTCTCCTCTTATAATTGA 1176 0.3895 MAFLPSFAPFVFLLLVIGCTARPFYPLPNKGDGGSRKPLQTFRPYNIAHRGSNGELPEETSAAYTKAIEEGADFIETDILSSKDGVLICFHDVNLDDTTDIANHEEFADRKRTYEVQGENITGFFTVDFTLKELKSLRVKQRYRYRDQQFNGKFQIITFEEFINIALDAPRVVGIYPEIKNPVFINQHVKWSDGKIFEDKFVETLQKYGLKGSYLSKDWLRQPVFIQSFAPTSLVYIANKTDLPKIFLIDDVDIPTQDTNQSYWEIISDEYLNYIKQYVVGIGPWKDTLVPVVNNYVATPTDLVSRAHAHNLQVHPYTYRNENLFLHFNFSQDPYVEYDYWINKIGVDGLFTDFTGSLHRFQEWTSKHQDDDDNNASKLLHKIALLLSSYN 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04662 391 CDD GDPD_ScGlpQ1_like 44 355 - -
Viun3g04662 391 ProSiteProfiles GP-PDE domain profile. 44 362 IPR030395 GO:0006629|GO:0008081
Viun3g04662 391 FunFam Glycerophosphodiester phosphodiesterase GDPD5 42 361 - -
Viun3g04662 391 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 40 372 - -
Viun3g04662 391 Pfam Glycerophosphoryl diester phosphodiesterase family 49 356 IPR030395 GO:0006629|GO:0008081
Viun3g04662 391 Gene3D Phosphatidylinositol (PI) phosphodiesterase 42 361 IPR017946 GO:0006629|GO:0008081
Viun3g04662 391 SUPERFAMILY PLC-like phosphodiesterases 44 360 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04662 Viun-Chr3 54059485 54063329 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04662 9 390 Acyl Lipid Metabolism Gene Families AT1G74210 73.890 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04662 K01126 - gmx:100778145 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04662 3 54059485 54063329 Viun3g04662 3 54059485 54063329 ECH