Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04657 ATGGCACAAACCCAAACCCAAACCCAGAGACCCTGTTCAAGCATCATCGATTCTCTGGGTGAAGAAATTGTGAGAATCATCGCACCCGTTTCAATATGCATGTTCTTGGTCGTAATATTGGTGTCAATTCTGAACACGGATTCTTCTCTCTTCGACGCATCGATGAGCATGGTCACCATGGCCTACACCGAGACAACCTCGGACTCCACCTGGGACAAATTCCTTGGTGCCCTTTTGAACTCTCTGGCTTTCGTCGTCCTCGTCACCTTCGCAACCTTCATCCTGGTTCTCCTCTTCTACTTCCGATGCACCAGGTTCTTAAAACTCTACATGGCTTTCTCCACTTTCATCGTGCTGGGGTTCCTCGGCGGTGAAGTCTCGCTGTTCTTGATCCAACAGTTTAGCACTCCCATTGATTGCATTACGTTTTTCCTCTTGCTGTGTAATTTCGCCGTTGTGGGTGTTTTGACCGTGTTTATGTCAAAAATGGCGATTTTTGTGACGCAGGGGTATTTGGTTGTTATTGGAATATTGATTGCTTATTCGTTTACTATGTTGCCTGAGTGGACAACCTGGGCCTTGCTTGTTGCTATGGCGCTGTACGATGTTGCTGCAGTTTTGTTACCAATAGGGCCATTAAGGCTTTTGGTGGAGCTTGCAATATCAAGGGATGAGGAAATTCCCGCATTGGTTTATGAGGCTAGACCAGTGAACCATGGTAATTTGAGTCCTAGGGATCTTGTGCAGAGGAGGCGATTATGGAGAGAAAGGAGGGTTGAGAATTCAAATATCCAAAGTGATTCGAACTCAGCGTTGGGCCATGGCCCCAGTGTTGAATTCCGCACTGATTCTGACGGAAGCCCCAGCAATAACTCAAACATGGTTAGGGAGAATGCCTCTAGAAATGCAAATCTGACAGCTAATAGTTCTGGTGGCTCTTATGGTTGCATAAATTTGGTGAATGCAGAGGAGGAGCCAGTGCGCGTTCATGAGACTGATTCAGACCTTTCTGCGCCCTTGATTGATCGTGGAATGAATGTCCAGCACGGTAGGGGGGAAGATGCTGTGCCAAGCGAGAATTTGATGCTAGAAGGAATTGGATTGGGTTCTTCTGGTTCAATCAAGTTAGGGCTGGGAGATTTTATCTTCTACAGTGTTTTGGTTGGCAGGGCGGCAATGTATGATTTTATGACGGTGTATGCATGTTATCTTGCTATCATTGCGGGTCTTGGCATAACTTTGATCCTTTTGGCTTTATATCAGAAGGCTTTGCCTGCTCTTCCTGTGTCAATAGCACTGGGTGTGTTGTTTTATTTCTTGACCAGGCTCTTACTTGAAGTATTTGTAGTACAATGTTCCTTAAATCTCCTGTTGTTCTAA 1380 0.4572 MAQTQTQTQRPCSSIIDSLGEEIVRIIAPVSICMFLVVILVSILNTDSSLFDASMSMVTMAYTETTSDSTWDKFLGALLNSLAFVVLVTFATFILVLLFYFRCTRFLKLYMAFSTFIVLGFLGGEVSLFLIQQFSTPIDCITFFLLLCNFAVVGVLTVFMSKMAIFVTQGYLVVIGILIAYSFTMLPEWTTWALLVAMALYDVAAVLLPIGPLRLLVELAISRDEEIPALVYEARPVNHGNLSPRDLVQRRRLWRERRVENSNIQSDSNSALGHGPSVEFRTDSDGSPSNNSNMVRENASRNANLTANSSGGSYGCINLVNAEEEPVRVHETDSDLSAPLIDRGMNVQHGRGEDAVPSENLMLEGIGLGSSGSIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGITLILLALYQKALPALPVSIALGVLFYFLTRLLLEVFVVQCSLNLLLF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04657 459 SMART psh_8 75 445 IPR006639 GO:0004190|GO:0016020
Viun3g04657 459 MobiDBLite consensus disorder prediction 264 295 - -
Viun3g04657 459 Gene3D Presenilin 367 451 IPR042524 -
Viun3g04657 459 FunFam Presenilin 349 450 - -
Viun3g04657 459 PRINTS Presenilin family signature 202 219 IPR001108 GO:0004190|GO:0016020|GO:0016485
Viun3g04657 459 PRINTS Presenilin family signature 185 192 IPR001108 GO:0004190|GO:0016020|GO:0016485
Viun3g04657 459 PRINTS Presenilin family signature 27 37 IPR001108 GO:0004190|GO:0016020|GO:0016485
Viun3g04657 459 PANTHER PRESENILIN 6 459 IPR001108 GO:0004190|GO:0016020|GO:0016485
Viun3g04657 459 Pfam Presenilin 20 449 IPR001108 GO:0004190|GO:0016020|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04657 Viun-Chr3 54038098 54039678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04657 7 459 Miscellaneous Gene Families AT2G29900 59.471 5.05e-158 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04657 K04505 - gmx:100799643 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04657 3 54038098 54039678 Viun3g04657 3 54038098 54039678 ECH