Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04628 ATGTCCGGTGCAAAGAAATCTCATTTGAAGGATGCTAAACCTAGTTCTCTTGAATCTTGGACTAATCCATTTGATTCTGATGATGAGGAAAAGAATACCAAAAAGTATAGTTCCTCAAGAAAGACATCTTCGGATCGCGCACTTGTTACGCTGGAAGTTAACACCAACCCCTTTAATGATGACGTTGATGCCACTAAGAAATCATCATTGACATCGTATGCCCTTCAATCGGCCAACCGGAACAGGTACAAGAATGATTTTCGTGATTCAGGAGGATTAGAGAATCAATCGGTTCAAGAACTGGAGAGTTATGCTGTTTACAAGGCTGAAGAGACCACAAATTCAGTCAACAATTGTTTGAAGATTGCAGAGAATATAAGAGAGGATGCCACCAAGACACTAGTCACCCTTCATCAACAGGGTGAGCAAATTACCAGGAGTCACCATGTTGCTGCTGACATTGACCACGATTTAAGTCGGGGGGAAAAGCTCTTGGGAAGCCTTGGTGGACTCTTCTCCAAAACTTGGAAACCAAAGAAGACACGAGCAATAACAGGCCCAGTTATTGTTGGAGATGACCCAGTACGGAGCAAGGGCAATCATCTGGAGCAGAGAGAGAAGTTAGGACTGACATCTGCCCCCAAAGGGCAGTCCAAGCTGCGGACCCCACCTCAAGAACCAACCAATGCACTTGAAAAAGTTGAGATTGAAAAGAATAAGCAAGATGATGCACTATCAGATTTAAGTGATCTGCTGGGAGAGCTTAAAGGCATGGCTGTTGACATGGGATCCGAGATTGAGAGGCATAACAAAGCATTGAATCATCTGTACGATGATGTGGATGAGTTGAATTTCCGAATGAAAGGTGCTAATCAACGTGGCCGTCGCTTACTCGGAAAATAA 903 0.4385 MSGAKKSHLKDAKPSSLESWTNPFDSDDEEKNTKKYSSSRKTSSDRALVTLEVNTNPFNDDVDATKKSSLTSYALQSANRNRYKNDFRDSGGLENQSVQELESYAVYKAEETTNSVNNCLKIAENIREDATKTLVTLHQQGEQITRSHHVAADIDHDLSRGEKLLGSLGGLFSKTWKPKKTRAITGPVIVGDDPVRSKGNHLEQREKLGLTSAPKGQSKLRTPPQEPTNALEKVEIEKNKQDDALSDLSDLLGELKGMAVDMGSEIERHNKALNHLYDDVDELNFRMKGANQRGRRLLGK 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04628 300 FunFam SNAP25 homologous protein SNAP33 92 169 - -
Viun3g04628 300 CDD SNARE_SNAP25N_23N_29N_SEC9N 104 167 IPR044766 GO:0005484|GO:0031201
Viun3g04628 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 235 297 IPR000727 -
Viun3g04628 300 MobiDBLite consensus disorder prediction 42 64 - -
Viun3g04628 300 MobiDBLite consensus disorder prediction 1 64 - -
Viun3g04628 300 SUPERFAMILY SNARE fusion complex 96 166 - -
Viun3g04628 300 FunFam SNAP25 homologous protein SNAP33 232 299 - -
Viun3g04628 300 Coils Coil 231 251 - -
Viun3g04628 300 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 22 300 - -
Viun3g04628 300 SUPERFAMILY SNARE fusion complex 235 298 - -
Viun3g04628 300 SMART tSNARE_6 101 168 IPR000727 -
Viun3g04628 300 SMART tSNARE_6 230 297 IPR000727 -
Viun3g04628 300 MobiDBLite consensus disorder prediction 24 41 - -
Viun3g04628 300 MobiDBLite consensus disorder prediction 190 228 - -
Viun3g04628 300 CDD SNARE_Qc 238 296 - -
Viun3g04628 300 Gene3D - 92 169 - -
Viun3g04628 300 Gene3D - 232 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04628 Viun-Chr3 53796631 53799315 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04628 K18211 - gmx:100809874 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04628 3 53796631 53799315 Viun3g04628 3 53796631 53799315 ECH