LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g04583	ATGGCAGCGGCACCTGCAGCTACTTTCACTGTTGGATCCACCGGTTCCCTTGGCCAAAGAGGAAGCTCTCTTCCTCAATCAAGGTCTTTTGGGATGAAATTCAACTCGCAAAATCCTTTGAAGAGTTTCTGTGGCCTCAAGGCTATGTCCTCTGTGAGATGTGAGTCAGAATTTTCTTTCTTAGGTAACAAAAGTGGTTCTGCTCTGCGGGCATCTTTTACATCCAAGGCTCAGAAGGAAAACAACCAGAATTTCAACTACAAGTTGCAGCCTCAAGCTTCGTACAAAGTTGCAGTTCTTGGGGCTGCCGGAGGGATTGGGCAGCCGCTCTCGCTTCTTATCAAGATGTCCCCTTTAGTTTCCGACCTGCATCTCTATGATATTGCGAATGTCAAGGGAGTGGCTGCTGATATCAGTCACTGCAACACACCCTCACAAGTCAGGGATTTCACTGGAGCTTCTGACTTGGCAAATTGTTTGAATGGTGTGGATGTTGTTGTCATTCCTGCCGGTGTTCCCAGGAAGCCCGGCATGACTCGTGATGACCTATTCAACATCAATGCTGGAATAGTCAGGGACTTGGTTTCGGCTGTTGCGGATAATTGCCCAGATGCTTTTATTCAAATTATCAGTAACCCTGTGAACTCTACTGTGCCTATTGCTGCAGAAGTTTTGAAACAGAAGGGTGTCTATGACCCTAAAAAGCTCTTTGGTGTTACCACACTGGATGTTGTGAGGGCAAACACATTTGTGGCTCAGAGGAAAAACCTGAAGCTGATTGATGTTGATGTCCCTGTTGTTGGGGGCCATGCCGGGATTACCATTCTTCCACTCTTGTCAAAGACAAGACCCTCAGCGAGTTTCACTGATGAAGAGGTTGAGGAGCTGACGGTGAGGATTCAAAACGCTGGTACTGAAGTTGTGGAAGCAAAGGCAGGTGCTGGGTCTGCTACCTTGTCAATGGCATATGCAGCTGCTAGATTTGTCGAATCGTCTTTGCGTGCACTTGATGGAGATGGGGATGTGTACGAGTGCTCATTTGTGCAATCAGATTTGACTGACCTTCCATTCTTTGCTTCCAGGGTGAAGCTTGGTAGGAAAGGTATCGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGTCTGACTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCAGAACTCCAGGCCAGCATAGAGAAGGGGATTGCTTTCGCTCAGAAGCAAGCTGTTACTGCTTAA	1242	0.4742	MAAAPAATFTVGSTGSLGQRGSSLPQSRSFGMKFNSQNPLKSFCGLKAMSSVRCESEFSFLGNKSGSALRASFTSKAQKENNQNFNYKLQPQASYKVAVLGAAGGIGQPLSLLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSQVRDFTGASDLANCLNGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADNCPDAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEVEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVQSDLTDLPFFASRVKLGRKGIEALIPSDLQGLSDYEQKALEALKPELQASIEKGIAFAQKQAVTA	413

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g04583	413	Pfam	lactate/malate dehydrogenase, NAD binding domain	96	238	IPR001236	GO:0016491
	Viun3g04583	413	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	84	239	IPR036291	-
	Viun3g04583	413	ProSitePatterns	Malate dehydrogenase active site signature.	239	251	IPR001252	GO:0006108\|GO:0016615
	Viun3g04583	413	FunFam	Malate dehydrogenase	93	239	-	-
	Viun3g04583	413	NCBIfam	malate dehydrogenase	96	407	IPR010097	GO:0006099\|GO:0030060
	Viun3g04583	413	CDD	MDH_glyoxysomal_mitochondrial	95	406	IPR010097	GO:0006099\|GO:0030060
	Viun3g04583	413	FunFam	Malate dehydrogenase	240	408	-	-
	Viun3g04583	413	PANTHER	MALATE AND LACTATE DEHYDROGENASE	78	409	-	-
	Viun3g04583	413	MobiDBLite	consensus disorder prediction	1	24	-	-
	Viun3g04583	413	SUPERFAMILY	LDH C-terminal domain-like	239	406	IPR015955	GO:0003824\|GO:0016616
	Viun3g04583	413	MobiDBLite	consensus disorder prediction	9	24	-	-
	Viun3g04583	413	Gene3D	-	93	239	-	-
	Viun3g04583	413	Pfam	lactate/malate dehydrogenase, alpha/beta C-terminal domain	240	405	IPR022383	GO:0016616
	Viun3g04583	413	Gene3D	-	240	411	IPR015955	GO:0003824\|GO:0016616

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g04583	Viun-Chr3	53450792	53452944	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g04583	K00026		-	gmx:100783173	745.732

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun3g04583	3	53450792	53452944	Viun3g04583	3	53450792	53452944	ECH