Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04564 ATGGATGTCTCAAACAAAAAGGGTTCCCAGGAAGGAGATGCGCCAAGAAAGTTGTTCAAACCTTCAAATGATCCCAAAGAGGAGGGTGGCCAAGAGAATGAACAAAACCATGAAACTGAGATTCCTGACAAGACCCCACGTATTGGAGAACTGTACAAGGATCTCTCTATCAATGTTCTCCTAAAACTGTCAAGGTCTGATTATGGTTTAGTTGCTGCATTGAACAGTAGTTTTCGAACTCTGATTCGGAGTGGAGAACTGTATCGGCTGAGGCGGGAAATGGGTGTGGTAGAGCATTGGATTTACTTCTCTTGCAATCTCCACCAATGGGAGGCATATGATCCAAACCGTGAGCGGTGGATGAAGTTGCCAAAAATGCCTCGTAACGATTGCTTTATGTGTTCGGACAAGGAGTCTTTGGGTGTTGGTACTGATCTTCTTGTTTTCGGAAGGGATGTATCGGCTCCAGTGGTTTATGGATATAGCCTTTTGACCAACACCTGGTCAATTGCTGTAGAAATGAACATTCCCAGATGCTTGTTTGCATCTGCAAGCATTGGAGGAATAGCCATAGTGGCTGGTGGTGTTGACCCAGTGGGTAATGTGTTGAACGTAGCTGAGCTTTATAACTCAGACACCAGAAAGTGGGAGACTCTCCCAAACATGCATAGAAAAAGGAGGATGACTTCTGGTGTATTCATGGATGGGAAATTTTATGTGATTGGTGGGATTGCAGAAGACAACAAAACTGAGTTAACCAGCGGTGAGGAGTATGATCTGGAGAGGAAAACATGGCGTGAAATACCGGACATGTTTCCTCCGCGAGGTGGAGAAGTCAATATAGGAGCTCCTCCTTTGGTTGCAGTTGTAAACAATGTGTTGTTTTCTGCAGATTGTAACCAGCATATAGTAAGGAGATATGAGAAAGGGAGTAACAAATGGGTAACCATTGGAGATCTTCCTGAGAGAACATCCTCTGTGCATGGATGGGGAATAGGATTTCGGGCATGTGGGAATCGACTAATGGTTATTGGTGGACTTACGGCTGAGAGTGCAGGTGTGACTGAAATCAATTCTTGGATCCCAGGTGAATATCCACTGCAGTGGAACATCCTTGGCAGAAGACACATAGGGAGTTTTGTCAGCAACTGCGCAGTCATGGGATGCTGA 1170 0.4513 MDVSNKKGSQEGDAPRKLFKPSNDPKEEGGQENEQNHETEIPDKTPRIGELYKDLSINVLLKLSRSDYGLVAALNSSFRTLIRSGELYRLRREMGVVEHWIYFSCNLHQWEAYDPNRERWMKLPKMPRNDCFMCSDKESLGVGTDLLVFGRDVSAPVVYGYSLLTNTWSIAVEMNIPRCLFASASIGGIAIVAGGVDPVGNVLNVAELYNSDTRKWETLPNMHRKRRMTSGVFMDGKFYVIGGIAEDNKTELTSGEEYDLERKTWREIPDMFPPRGGEVNIGAPPLVAVVNNVLFSADCNQHIVRRYEKGSNKWVTIGDLPERTSSVHGWGIGFRACGNRLMVIGGLTAESAGVTEINSWIPGEYPLQWNILGRRHIGSFVSNCAVMGC 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04564 389 Gene3D - 90 366 IPR015915 GO:0005515
Viun3g04564 389 SMART kelc_smart 189 236 IPR006652 GO:0005515
Viun3g04564 389 SMART kelc_smart 145 188 IPR006652 GO:0005515
Viun3g04564 389 SMART kelc_smart 237 292 IPR006652 GO:0005515
Viun3g04564 389 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 42 389 - -
Viun3g04564 389 MobiDBLite consensus disorder prediction 1 45 - -
Viun3g04564 389 FunFam F-box/kelch-repeat protein SKIP11 93 374 - -
Viun3g04564 389 SUPERFAMILY Kelch motif 105 386 IPR015915 GO:0005515
Viun3g04564 389 Pfam Kelch motif 226 271 IPR006652 GO:0005515
Viun3g04564 389 Pfam Kelch motif 177 222 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04564 Viun-Chr3 53277636 53280618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04564 47 221 EF-hand Containing Proteins AT4G39560 29.843 6.52e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04564 - - pvu:PHAVU_003G191300g 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04564 3 53277636 53280618 Viun3g04564 3 53277636 53280618 ECH