Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04543 ATGACGACGCCGTTTCAGCAACCACCCCAAACCGTACGGAGACTGGTCGTAGAAGTCATCGACGCGCGCAATCTTCTCCCCAAAGATGGCCAAGGTAGCTCCAGCCCTTACGTGGTCGCGGACTTCGACGGCCAGAGGAAGCGAACCACCACCCGCTTCAAGGAGCTGAACCCGGTCTGGAACGAGCCGCTCGAGTTCATTGTGTCCGACCCGGATAATATGGAGTTTGAGGAGCTCGAAGTTGAGGTCTACAACGACAAGAAGTTCGGCAACGGTAGCGGACGCAAGAACCATTTCCTCGGGAGGGTTAAACTGTATGGTACTCAGTTTTCTCGAAGAGGCGAAGAAGCTCTTGTTTACTACACGCTGGAGAAGAGGAGCGTCTTCAGTTGGATAAGGGGAGAAATTGGCCTCAGGATTTATTACTACGATGAAATGCTTACTGAAGAGGAGAAACCGCCAACGCAGCAGCCGGAGGAGCAGGGTGAGAGACCGGAGCAAGAGCGGAACAGGCCTCCGCCGGGAATGGTGGTTGTTGAGGAGGGAAGGGTTTTCGAAGCGCCTGGACCGATGGAGCAATGCGTGCCTCTTCCTACTGGTCTTCCTCATTCGCCCCATGTAGTGGTTGTGGAGGAATCGCCGCCACCGGTGGTTCATGTCCCTCAGGATCCGCCGTTGCCGGAAATGTCTGAACCTCCGCTGTCGGAAATGCCGTTTCATCCGGAGGTGAGGAAAATGCAGGCCAACAGAGGCGAGAGGGTGAAGATTTTGAAGCGGCCGAACGGGGACTACTCGCCTAAAGATATTTCTTCAAAGAAAACAGGTAATGAGTCTGAGAGGGTTCATCCGTTCGATCTGGTGGAGCCGATGCAGTATCTGTTTGTCAAAATCGTAAAAGCTCGCGGGGTTGCTCCTCCCAGTGAAGCCCCTTTCGTGAAGGTCCGAACGTCGAGCCATTACATGAGATCGAAGCCAGCGAGTTTCAGACCCAACGAGCCCACTGAGTCGCCGGAGTGGAACCAGGTGTTTGCGCTTGGTTACAACAAGACCGACGCTAACAGCGCCACCCTGGAGATTTCCGTCTGGGATTCCTCGACAGAAAATTTTCTAGGCGGTGTTTGCTTCGACCTTTCCGATGTTCCAGTGAGAGATCCCCCTGACAGTCCCTTGGCGCCGCAATGGTACCGTCTTGAAGGAGGAACCGCCGATCAGAATCCCGGCAGAGTTTCCGGCGACATTCAGCTCTCTGTTTGGATTGGCACGCAATCCGACGACGCATTCCCAGAAGCGTGGATCTCGGATGCACCGCATGTCGCACATACTCGATCCAAGGTTTACCAATCGCCAAAGCTATGGTACCTTCGCGTGACGGTAGTGGAAGCACAAGACCTTAATATTGCGCCGAATCTGCCTCCACTGACAGCGCCGGAAGTGAGGGTGAAGGTGCAACTAGGGTTCCAATCGCAGCGAACAAGACGAGGATCAATGAACCACAGAAGCTTATCCTTCCACTGGAACGAGGACCTTCTCTTCGTGGCCGGGGAGCCTCTGGAAGATTCTGTCATCCTTCTGATAGAAGATCGCACTAGCAAGGAAGTGGCTCTCCTAGGCCACATCGTGGTTCCCCTGAGCTCCATCGAGCAACGAATCGACGAGCGCCACGTGGCGGCGAAATGGTTCCCGTTAGAAGGTGGGCCCTACTGCGGTCGAGTCTTCCTGCGTCTATGCCTGGAGGGCGGGTATCACGTTCTGGATGAAGCGGCGCACGTGTGCAGCGATTTCCGTCCCACGGCGAAGCAGTTATGGAAACCGCCGGTGGGTATTCTAGAACTGGGGATTCTGGGCGCCCGAGGGCTCCTTCCGATGAAATCAAAAGGCGGTGGAAAAGGCTCCACCGATGCCTACTGTGTGGCCAAGTATGGAAAAAAGTGGGTCCGAACCCGCACCGTAACCGACAGCTTCGATCCACGCTGGAACGAGCAGTACACGTGGCAGGTTTACGATCCCTGCACGGTCCTCACCGTTGGAGTGTTCGACAACTGGCGCATGTTTGCTGACGTGCCAGAAGACAGGCCCGATTGCCGTATCGGTAAGGTTCGCATACGCGTCTCTACGCTTGAGAGCAACAGAGTGTATACCAATTCCTACCCCCTCCTAGTCCTCACACGAACCGGGTTGAAGAAAATGGGGGAAATCGAGTTAGCGGTTCGTTTCGCCTGCCCCTCCTTGTTGCCCGACACCTGTGCAGTTTACGGTCAGCCACTGCTTCCACGAATGCACTATCTCCGGCCACTCGGGGTGGCGCAGCAGGAGGCGCTGCGTGGGGCAGCGACAAAGATGGTGGCGCAGTGGCTGGCCAGGTCAGAGCCACCGCTGGGGCACGAGGTAGTTCGGTACATGTTGGATGCAGACTCACACGTGTGGAGCATGAGGAAGAGCAAGGCGAATTGGTTCAGAATCGTGGCGGTTTTGGCTTGGGCCGTTGGTTTGGCGAAATGGTTGGATGATATAAGAAGGTGGAAGAACCCTGTTACCACGGTGCTGCTCCACATTCTTTACTTAGTGCTTGTTTGGTATCCAGATTTGATTGTCCCCACAGGGTTCTTATACGTGGTCTTAATTGGGATATGGTATTACCGGTTCAGGCCGAAAATACCGGCTGGGATGGATACCCGGTTGTCTCAGGCAGAAGCGGTTGACCCGGATGAGTTGGACGAGGAATTTGACACCATGCCAAGTTCTAAACCACCGGATATAATCAGAATGCGGTATGATAGGTTAAGAATGCTGGCAGCTCGAGTCCAAACGGTGTTGGGTGATTTTGCAACCCAGGGAGAGAGGGTTCAAGCCTTGGTTAGTTGGAGAGATCCCAGGGCTACCAAGTTGTTCATCGGAGTATGCCTTGCTATAACCCTCACACTCTATGCAATGCCGCCAAAAATGGTGGCCGTCGCCCTAGGCTTTTATTACCTCCGCCACCCGATGTTCCGGAACCCAATGCCCTCCGCCACCTTAAACTTTTTCCGGCGACTTCCCAGCCTCTCCGATCGCTTAATGTAG 3060 0.5474 MTTPFQQPPQTVRRLVVEVIDARNLLPKDGQGSSSPYVVADFDGQRKRTTTRFKELNPVWNEPLEFIVSDPDNMEFEELEVEVYNDKKFGNGSGRKNHFLGRVKLYGTQFSRRGEEALVYYTLEKRSVFSWIRGEIGLRIYYYDEMLTEEEKPPTQQPEEQGERPEQERNRPPPGMVVVEEGRVFEAPGPMEQCVPLPTGLPHSPHVVVVEESPPPVVHVPQDPPLPEMSEPPLSEMPFHPEVRKMQANRGERVKILKRPNGDYSPKDISSKKTGNESERVHPFDLVEPMQYLFVKIVKARGVAPPSEAPFVKVRTSSHYMRSKPASFRPNEPTESPEWNQVFALGYNKTDANSATLEISVWDSSTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGGTADQNPGRVSGDIQLSVWIGTQSDDAFPEAWISDAPHVAHTRSKVYQSPKLWYLRVTVVEAQDLNIAPNLPPLTAPEVRVKVQLGFQSQRTRRGSMNHRSLSFHWNEDLLFVAGEPLEDSVILLIEDRTSKEVALLGHIVVPLSSIEQRIDERHVAAKWFPLEGGPYCGRVFLRLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKSKGGGKGSTDAYCVAKYGKKWVRTRTVTDSFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADVPEDRPDCRIGKVRIRVSTLESNRVYTNSYPLLVLTRTGLKKMGEIELAVRFACPSLLPDTCAVYGQPLLPRMHYLRPLGVAQQEALRGAATKMVAQWLARSEPPLGHEVVRYMLDADSHVWSMRKSKANWFRIVAVLAWAVGLAKWLDDIRRWKNPVTTVLLHILYLVLVWYPDLIVPTGFLYVVLIGIWYYRFRPKIPAGMDTRLSQAEAVDPDELDEEFDTMPSSKPPDIIRMRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCLAITLTLYAMPPKMVAVALGFYYLRHPMFRNPMPSATLNFFRRLPSLSDRLM 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04543 1019 Gene3D C2 domain 436 579 IPR035892 -
Viun3g04543 1019 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 292 436 IPR035892 -
Viun3g04543 1019 FunFam C2 domain-containing protein 590 742 - -
Viun3g04543 1019 Gene3D C2 domain 604 741 IPR035892 -
Viun3g04543 1019 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 607 759 IPR035892 -
Viun3g04543 1019 MobiDBLite consensus disorder prediction 149 175 - -
Viun3g04543 1019 MobiDBLite consensus disorder prediction 149 170 - -
Viun3g04543 1019 ProSiteProfiles C2 domain profile. 590 716 IPR000008 -
Viun3g04543 1019 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 452 598 IPR035892 -
Viun3g04543 1019 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 152 IPR035892 -
Viun3g04543 1019 Pfam Plant phosphoribosyltransferase C-terminal 864 1019 IPR013583 -
Viun3g04543 1019 Pfam C2 domain 292 395 IPR000008 -
Viun3g04543 1019 Pfam C2 domain 607 718 IPR000008 -
Viun3g04543 1019 Pfam C2 domain 14 106 IPR000008 -
Viun3g04543 1019 Pfam C2 domain 452 562 IPR000008 -
Viun3g04543 1019 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 15 1019 IPR047259 -
Viun3g04543 1019 CDD C2C_MCTP_PRT_plant 453 596 IPR047258 -
Viun3g04543 1019 CDD C2B_MCTP_PRT_plant 292 421 IPR047257 -
Viun3g04543 1019 Gene3D C2 domain 288 433 IPR035892 -
Viun3g04543 1019 Gene3D C2 domain 10 172 IPR035892 -
Viun3g04543 1019 CDD C2A_MCTP_PRT_plant 14 144 - -
Viun3g04543 1019 MobiDBLite consensus disorder prediction 249 278 - -
Viun3g04543 1019 ProSiteProfiles C2 domain profile. 1 120 IPR000008 -
Viun3g04543 1019 CDD C2D_MCTP_PRT_plant 608 735 IPR047255 -
Viun3g04543 1019 FunFam C2 domain-containing protein 274 419 - -
Viun3g04543 1019 ProSiteProfiles C2 domain profile. 273 395 IPR000008 -
Viun3g04543 1019 ProSiteProfiles C2 domain profile. 432 560 IPR000008 -
Viun3g04543 1019 SMART C2_3c 453 555 IPR000008 -
Viun3g04543 1019 SMART C2_3c 608 715 IPR000008 -
Viun3g04543 1019 SMART C2_3c 292 389 IPR000008 -
Viun3g04543 1019 SMART C2_3c 14 119 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04543 Viun-Chr3 53118242 53121596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04543 2 1019 Lipid Metabolism Gene Families AT1G74720 71.573 0.0 1565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04543 - - gmx:100783882 1889.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04543 3 53118242 53121596 Viun3g04543 3 53118242 53121596 ECH