Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04511 ATGAAGATGATGAGTGAGATGTGGACAACAATGGGGTCAACCTTAGCGAGCTTCATGTTCTTGTGGACGATCATGAGACAGTACTGTCCCTACGGGGTTCAACGATTCTTGGAGAAGTACACACACAGGATCATGAGTTACTTCTCCCCTTACATTCGAATCTCCTTCCATGAGTACATGGGAGACAGGCTAAAGCGCAGTGAGGCCTATGGGGCTGTGGAGGCATATCTCAGTGCCAACACATCAAAGAGTGCCAAAAGGCTCAAAGCTGAAATGGGTAAAGATAGCAGCAACCTGGTGTTGACCATGGATGAGTACGAGAGGGTAACGGATGAGCACGAGGGTGTGAAAGTTTGGTGGGTGTGTAGCAAAGTGATGTCACCAACGAGGTCTTCAATGTCCTATTATCCAGAACAGGAGAGAAGGTTCTACAAGCTCACTTTTCACAACAAGTATAGAGAGGTCATAACCGAGTCGTATTTGGAGCATGTGATGAGGGAGGGGAAGGAGATTCGTTTGAGGAACAGGCAGAGGAAGTTGTATACTAATAGCCCTGGCTACAAGTGGCCGAGTTACAAGCAAACGATGTGGAGCCACATTGTGTTTGAGCACCCTGCTACTTTTGAAACAATGGCCTTGGAGCCTGAGAAGAAAAAGGAGATCATTGAGGATTTGGTGACTTTCAGCAAGAGCAAGGATTTCTATGCAAGGATTGGGAAGGCATGGAAGAGAGGGTACCTTCTTCATGGTCCTCCAGGGACGGGGAAGTCCACTATGATTGCTGCAATGGCGAATTTGTTGGCCTATGATGTGTATGACTTGGAGCTCACTGCAGTGAAGGACAACACAGAGTTGAGGAAGCTTCTGATTGAGACAACCAGTAAGTCTATAATTGTTATTGAAGACATTGATTGTTCTCTTGATCTTACAGGGCAGAGGAAGAAGAAGACAGAGAAGTTGTTGTCGGACGAGGAGACTGATAAGGATGTTGTTGTCGGAAGGAAAGAGGGGAAGGAAGAAGGAGGGAGTGGCAGCAGAGTCACACTCTCAGGGCTGTTGAATTTCATTGATGGGATTTGGTCTGCTTGTGGAGGGGAAAGGTTGATTGTGTTCACAACCAATTATGTGGAGAAACTTGATCCTGCACTCATTAGAAGGGGGAGAATGGACAAACACATTCAACTCTCTTATTGCACTTTTGATGGCTTTAAAGTGCTTGCAAATAATTACTTGAAGCTACAAACTCATCCTTTGTTTGACACCATCAAGAGGCTAATAGGTGAGGCCAAAATCACCCCTGCTGATGTTGCTGAAAACCTCATGCCCAAGTCCCCATTGGATGATCCTCACAAGTGCCTCTCCAACTTGATTGAAGCACTTGAGAAAGCTGCAAAAACTGAGGAGCTGGAGCAGAGTTGTGCCATTCAACATGAGGAACTTCTTCAACAAAATGGCTCCATTAAGGAAAATGGTGAGTGA 1479 0.4584 MKMMSEMWTTMGSTLASFMFLWTIMRQYCPYGVQRFLEKYTHRIMSYFSPYIRISFHEYMGDRLKRSEAYGAVEAYLSANTSKSAKRLKAEMGKDSSNLVLTMDEYERVTDEHEGVKVWWVCSKVMSPTRSSMSYYPEQERRFYKLTFHNKYREVITESYLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMALEPEKKKEIIEDLVTFSKSKDFYARIGKAWKRGYLLHGPPGTGKSTMIAAMANLLAYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKTEKLLSDEETDKDVVVGRKEGKEEGGSGSRVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIQLSYCTFDGFKVLANNYLKLQTHPLFDTIKRLIGEAKITPADVAENLMPKSPLDDPHKCLSNLIEALEKAAKTEELEQSCAIQHEELLQQNGSIKENGE 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04511 492 CDD RecA-like_BCS1 221 393 - -
Viun3g04511 492 ProSitePatterns AAA-protein family signature. 367 386 IPR003960 GO:0005524|GO:0016887
Viun3g04511 492 PANTHER BCS1 AAA-TYPE ATPASE 10 468 - -
Viun3g04511 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 458 IPR027417 -
Viun3g04511 492 Coils Coil 450 470 - -
Viun3g04511 492 Gene3D - 393 460 - -
Viun3g04511 492 SMART AAA_5 242 399 IPR003593 GO:0016887
Viun3g04511 492 Gene3D - 202 392 IPR027417 -
Viun3g04511 492 FunFam AAA-ATPase ASD, mitochondrial 198 393 - -
Viun3g04511 492 Pfam ATPase family associated with various cellular activities (AAA) 247 396 IPR003959 GO:0005524|GO:0016887
Viun3g04511 492 Pfam Domain associated at C-terminal with AAA 30 122 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04511 Viun-Chr3 52879270 52881133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04511 207 422 Miscellaneous Gene Families AT5G58870 26.786 1.34e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04511 - - gmx:100798176 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04511 3 52879270 52881133 Viun3g04511 3 52879270 52881133 ECH