Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04486 ATGGTTTCCGATTCAATCTCTGCCGTGCCGATTCCCTCCGCCGCAAACACTAAGAACCCCGGGAAGAAGAAGAGGACTAACAGGTCTGCAAAATTGAAGCAGTATAAAATCGATGCGCGCCGCGAACAGTGGTTATCGCAAGGTGTGGTGAAGAGTAAGGGATGCAAGGACGGTGTGGACGATGACGTCGTTCACGCGCCGCCGCCGTCGGTAAATCACGGCAAGCACTCCTTGGAGCCTCTTAACACGAGGCGCGAAGGCGAAGAAGACGACGGATTGATTCATCATGACAGCGATTCCGAGTCTCCTACCAACTGTCCTGCCGGCGTATTGTGCGGCAATGATTCGGGAACAAATTTCACCGGAAGCAGTAGTGGTGGGAGCAGCAGCAGCAGCAGCAGTTCAAGCAGCGGCGGGTGCTGTTCCGGGAACATTACCGAGGAGGAGGGGGAGGAGGAGGAAGAAGAAGGTGAGGACGATGATGACGGTTGCTTGGATGATTGGGAGGCCATGGCAGATGCTTTAGCCGCCGATGACAAGCACGAAAATCCTTGTTCTGATTCACCCCCTGTGGTTTTGCCTCGTGAAGGATCCAATTTAGAGTCTCCGAATTCAAAACCCGAGAGTAGTAGATTGGTTCCTTGGGGCTCTGGTAGTAGCCGAGCGTGGAGGGCCGATGACGCCTTTCGCCCTCAGAGTTTGCCAAATTTGTCTAAGCAGCACAGTATGCCGAACCCTGATCGCCGCTGCGTAGGAGGGGTCCCCTGGGCTCGTGTCTCCACACCTTCCTCGTGTCCTATTTGCTGTGAGGATCTGGATTTGACGGACACGAGTTTCTTGCCTTGTTTCTGTGGGTTTCGGCTTTGCCTCTTTTGCCACAAGAGGATTCTGGAGGAGGATGGGCGTTGCCCCGGGTGTAGGAAGCCTTATGAGTGTGAACCTGTTGAGACAGAGGCGAGTGTGCATGGAGGCAGCCTCACTCTTCGGTTGGCACGTTCCTGCAGCATGATCGAGAGGTCTTAA 1023 0.5464 MVSDSISAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGVVKSKGCKDGVDDDVVHAPPPSVNHGKHSLEPLNTRREGEEDDGLIHHDSDSESPTNCPAGVLCGNDSGTNFTGSSSGGSSSSSSSSSSGGCCSGNITEEEGEEEEEEGEDDDDGCLDDWEAMADALAADDKHENPCSDSPPVVLPREGSNLESPNSKPESSRLVPWGSGSSRAWRADDAFRPQSLPNLSKQHSMPNPDRRCVGGVPWARVSTPSSCPICCEDLDLTDTSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEASVHGGSLTLRLARSCSMIERS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04486 340 MobiDBLite consensus disorder prediction 146 168 - -
Viun3g04486 340 SUPERFAMILY RING/U-box 259 316 - -
Viun3g04486 340 MobiDBLite consensus disorder prediction 99 143 - -
Viun3g04486 340 Pfam RING/Ubox like zinc-binding domain 265 311 - -
Viun3g04486 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 322 IPR013083 -
Viun3g04486 340 CDD mRING-HC-C4C4_CNOT4 264 308 IPR039515 -
Viun3g04486 340 ProSiteProfiles Zinc finger RING-type profile. 265 307 IPR001841 -
Viun3g04486 340 MobiDBLite consensus disorder prediction 47 218 - -
Viun3g04486 340 MobiDBLite consensus disorder prediction 78 98 - -
Viun3g04486 340 MobiDBLite consensus disorder prediction 198 216 - -
Viun3g04486 340 MobiDBLite consensus disorder prediction 1 35 - -
Viun3g04486 340 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 261 337 IPR039780 GO:0004842|GO:0030014
Viun3g04486 340 FunFam RING/U-box superfamily protein 258 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04486 Viun-Chr3 52582564 52584184 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04486 - - var:108330419 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04486 3 52582564 52584184 Viun3g04486 3 52582564 52584184 ECH