Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04475 ATGCTGCTGGGAAGTAACTTACAGTTTTCTCGGTGGACTTTCTTCAAACACCTTCCGACACGAAAATTCAAAATAACAACACTGTGTCAGAACAAATCCGTAGCCACTCTCTGCCACTTCGAAACGCTAACCTCCCACCAGAAACATCAGATTCATCTCTACGTCGACACTCTTCTTCAATGGAACAAGCGCATGAATCTCACTGCTGTTAGAGAGGTGAATGATGTGATGGAAAGGCACGTGGAGGACTCCCTCGCGATTTTGCCTCCGCTCAGCGATTGTTACCGCTCGCACTGCGGCTCTTCTTGCGATAAGTTGAGTCTCGTCGATGTTGGAAGTGGCGCTGGCCTTCCAGGAGTAGTTTTGGCCATAGCTCGCCCAGAGTGGGATGTAACGCTGATGGAGTCTATGAACAAGAGATGCGTCTTCTTGGAGCACGTCGTTGGTGTTATCGGTTCCTCAAACGTTAAAATTGTAAGAGGAAGAGCAGAGAATTTAGGGCAGAATCCTTGCTTCAGAGAGCAATTTGATGTAGCAGTGGCCAGGGCAGTTGCAGAAATGAGAATATTGGCTGAATACTGTCTTCCTTTGGTTCGTGTTGGTGGGTTGTTTATAGCTGCCAAGGGTCATGATCCTAAGGATGAAATTAAGAAAGCTGAAAGTGCCATCCAGAAGGTGGGTGCATCTCTATTGCAAGTTTGCTCAGTGGAATCGCAAAGCCCATATGGTCAGCGAACTGCTGTCATATGTTCAAAGGATCGTCCTACCCCATTGAAATATCCCCGTGATCCAGGTACACCAGCTAAAGAACCATTGTAG 819 0.4725 MLLGSNLQFSRWTFFKHLPTRKFKITTLCQNKSVATLCHFETLTSHQKHQIHLYVDTLLQWNKRMNLTAVREVNDVMERHVEDSLAILPPLSDCYRSHCGSSCDKLSLVDVGSGAGLPGVVLAIARPEWDVTLMESMNKRCVFLEHVVGVIGSSNVKIVRGRAENLGQNPCFREQFDVAVARAVAEMRILAEYCLPLVRVGGLFIAAKGHDPKDEIKKAESAIQKVGASLLQVCSVESQSPYGQRTAVICSKDRPTPLKYPRDPGTPAKEPL 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04475 272 Pfam rRNA small subunit methyltransferase G 48 237 IPR003682 GO:0005737|GO:0006364|GO:0008649
Viun3g04475 272 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 37 272 IPR029063 -
Viun3g04475 272 Hamap Ribosomal RNA small subunit methyltransferase G [rsmG]. 40 249 IPR003682 GO:0005737|GO:0006364|GO:0008649
Viun3g04475 272 CDD AdoMet_MTases 108 205 - -
Viun3g04475 272 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 6 272 IPR003682 GO:0005737|GO:0006364|GO:0008649
Viun3g04475 272 Gene3D Vaccinia Virus protein VP39 23 272 IPR029063 -
Viun3g04475 272 FunFam Ribosomal RNA small subunit methyltransferase G 27 272 - -
Viun3g04475 272 NCBIfam 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 53 248 IPR003682 GO:0005737|GO:0006364|GO:0008649
Viun3g04475 272 MobiDBLite consensus disorder prediction 253 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04475 Viun-Chr3 52488908 52495981 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04475 K03501 - gmx:100818428 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04475 3 52488908 52495981 Viun3g04475 3 52488908 52495981 ECH