Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04454 ATGGCTGCAACAGCTTCAAGGTTCATCAAGTGTGTCACAGTTGGGGATGGAGCTGTAGGCAAAACTAGCATGCTCATTTGCTATACAAGCAACAAATTCCCCACGGACTATGTTCCAACAGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAGGCACAACTGTCAATTTAGGTCTCTGGGATACTGCAGGGCAAGAGGATTACAACAGGCTTAGGCCTTTGAGCTACAGAGGGGCAGATGTGTTTGTCCTGGCTTTCTCTCTAGTTAGTCATGCAAGCTACGAAAATGTGTTGAAGAAGTGGGTTCCTGAACTGCAGCATTTTGCTCCTGGCATCCCAGTGGTGCTAGTTGGCACCAAATTGGATCTCCGAGAAGATAAGCACTATTTGGCTGAGCATCCTGGCATGGTGGCTGTGACTTCTCAGCAAGGTGAGGAATTGCGTAAACTAGTAGGAGCTACATATTATATTGAGTGCAGCTCAAAAACTCAGCAGAACGTGAAGTCAGTGTTTGATGCTGCTATCAAGGTGGTCATCAAGCCTCCAACAAAACAAGAGAAGAAGAAAAAACCACGTCGAGGGTGTCTTCTAAATGTGATGTGTGGAAGGAATTTAGTTCGTTTTAAATGA 633 0.4471 MAATASRFIKCVTVGDGAVGKTSMLICYTSNKFPTDYVPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSHASYENVLKKWVPELQHFAPGIPVVLVGTKLDLREDKHYLAEHPGMVAVTSQQGEELRKLVGATYYIECSSKTQQNVKSVFDAAIKVVIKPPTKQEKKKKPRRGCLLNVMCGRNLVRFK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04454 210 SMART rab_sub_5 9 182 - -
Viun3g04454 210 SMART ras_sub_4 6 182 - -
Viun3g04454 210 Pfam Ras family 10 179 IPR001806 GO:0003924|GO:0005525
Viun3g04454 210 CDD Rop_like 8 180 - -
Viun3g04454 210 ProSiteProfiles small GTPase Ras family profile. 4 201 IPR001806 GO:0003924|GO:0005525
Viun3g04454 210 NCBIfam small GTP-binding protein domain 9 173 IPR005225 GO:0005525
Viun3g04454 210 FunFam Rac-like GTP-binding protein 3 2 199 - -
Viun3g04454 210 ProSiteProfiles small GTPase Rab1 family profile. 4 210 - -
Viun3g04454 210 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Viun3g04454 210 PRINTS Transforming protein P21 ras signature 49 71 - -
Viun3g04454 210 PRINTS Transforming protein P21 ras signature 111 124 - -
Viun3g04454 210 PRINTS Transforming protein P21 ras signature 157 179 - -
Viun3g04454 210 PRINTS Transforming protein P21 ras signature 9 30 - -
Viun3g04454 210 PRINTS Transforming protein P21 ras signature 32 48 - -
Viun3g04454 210 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Viun3g04454 210 Gene3D - 2 199 IPR027417 -
Viun3g04454 210 PANTHER RHO FAMILY GTPASE 6 196 IPR003578 GO:0005525|GO:0007264
Viun3g04454 210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04454 Viun-Chr3 52308734 52311774 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04454 9 182 EF-hand Containing Proteins AT5G27540 26.437 5.46e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04454 K04392 - gmx:100806681 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04454 3 52308734 52311774 Viun3g04454 3 52308734 52311774 ECH