Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04452 ATGGCAGGTAACAAACGTAAGAGAGCACACAAACCCAATAGCTCCGCCCCCGAAACCCTAGACCTCGCCATCCCCGCTCCCTCCCCTGCCCTCGTCACCGCAACCGCTGCTGTCGCGCCTAATTCCGCCGCCAACGCTGCCTCAATGGAGGACGTCTTTTCCGTCGGCAACGTCGAGCTCATCGACAACACCGCCTCTCCCCGCGTTCGCCGCGCCCGTGGCCGCCCAAGAAAGCTCCCCGTTCACTCCGAAAAACCTCTATCTCTTGCGACGGGGCGCCGCCTTGTCCGTCCACTGGACAAAGGAGACTTCTCGGTTCCCGGCGACGCCGGAGTGTCCACTTTGGTGGCGATGGAGGTGGACAAGGGGTGGGAAGCGCGGGTGATTCCGGAGATGGACTCCGTGGTAAAGGTGTTTTGTGTCCACACGGAACCGAATTTTTCGCTGCCGTGGCAGCGGAAGAGACAGTACAGCTCGAGTAGTAGCGGGTTTGTGATTGGCGGGAGAAGGGTTCTGACTAATGCGCATTCGGTGGAACACTACACACAGGTCAAGCTCAAGAAACGTGGCTCTGATACTAAGTACTTGGCCACTGTGCTTGCCATTGGAACCGAATGTGATATTGCCATGCTTACAGTGGATGATGATGAGTTCTGGCAAGGGATGTCACCTGTTCAGTTTGGGGAGTTGCCGGCACTTCAAGATGCGGTAACTGTTGTGGGCTACCCAATTGGTGGAGATACTATCTCGGTGACCAGTGGTGTTGTATCACGCATTGAGATTCTATCTTATGTTCATGGTTCTACAGAGCTTTTAGGTTTACAGATAGATGCTGCTATAAATTCTGGCAATTCTGGAGGACCTGCATTTAATGATAAAGGAAACTGTGTGGGGATTGCATTTCAGTCCCTTAAGCACGAAGATGCGGAGAATATAGGTTATGTCATTCCAACACCAGTTATCATGCATTTCATCCGGGATTACGAGAAGAATGGAGGCTACACTGGGTTCCCTATTCTAGGGGTTGAGTGGCAGAAAATGGAAAACCCTGATCTGCGAATGTCAACTGGCATGAGACCTGACCAGAAAGGTGTGCGCATTAGAAGGATTGATCCTACTGCTCCAGAATCCAAGGTTTTGAAGCCATCAGATGTTATCCTTAGTTTTGATGGGATTGATATTGCCAATGATGGAACAGTTCCATTTCGACATGGAGAGCGCATTGGCTTCAGTTATCTCATCTCACAGAAATATACTGGGGATAATGCAGCAATTGAAGTAATGCGAAATGCGAACATTTTAAAATTTGACATTAAACTCGAAACTCACAGAAGGCTTATTCCATCACATAGCAAGGGCAAGCCTCCCTCGTATTATATAATTGCTGGATTTGTTTTTACAACAGTTTCAGTTCCATATCTTCGTTCTGAGTATGGAAAGGATTATGAATATGAAGCTCCAGTAAAGCTTTTGGATAAATTGCTGCATTCAATGCCACAATCACCAGATGAACAACTTGTTGTGGTCTCTCAGGTGCTCGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACATCCAGGTCCTCGCTTTCAATGGTAAACCAGTGAAAAACCTGAAGAGCTTGGCCACTATGGTAGAGAGCTGCAATGATGAATATCTAAAATTCGATCTAGATTATGATCAGATAGTGGTCCTTCGCACAAAGACTGCAAAAGCAACTACTCTTGATATTCTTGCAACACACTGTATTCCAGCAGCGATGTCTGATGATCTTAAGTTATGA 1788 0.476 MAGNKRKRAHKPNSSAPETLDLAIPAPSPALVTATAAVAPNSAANAASMEDVFSVGNVELIDNTASPRVRRARGRPRKLPVHSEKPLSLATGRRLVRPLDKGDFSVPGDAGVSTLVAMEVDKGWEARVIPEMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWQGMSPVQFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDAENIGYVIPTPVIMHFIRDYEKNGGYTGFPILGVEWQKMENPDLRMSTGMRPDQKGVRIRRIDPTAPESKVLKPSDVILSFDGIDIANDGTVPFRHGERIGFSYLISQKYTGDNAAIEVMRNANILKFDIKLETHRRLIPSHSKGKPPSYYIIAGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLVADINIGYEDIVNIQVLAFNGKPVKNLKSLATMVESCNDEYLKFDLDYDQIVVLRTKTAKATTLDILATHCIPAAMSDDLKL 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04452 595 Gene3D - 219 330 IPR043504 -
Viun3g04452 595 PRINTS HtrA/DegQ protease family signature 191 211 IPR001940 GO:0004252|GO:0006508
Viun3g04452 595 PRINTS HtrA/DegQ protease family signature 163 175 IPR001940 GO:0004252|GO:0006508
Viun3g04452 595 PRINTS HtrA/DegQ protease family signature 379 391 IPR001940 GO:0004252|GO:0006508
Viun3g04452 595 PRINTS HtrA/DegQ protease family signature 233 257 IPR001940 GO:0004252|GO:0006508
Viun3g04452 595 PRINTS HtrA/DegQ protease family signature 270 287 IPR001940 GO:0004252|GO:0006508
Viun3g04452 595 Pfam PDZ domain 447 592 IPR041517 -
Viun3g04452 595 MobiDBLite consensus disorder prediction 1 22 - -
Viun3g04452 595 Pfam Trypsin-like peptidase domain 162 299 - -
Viun3g04452 595 Gene3D - 123 218 IPR043504 -
Viun3g04452 595 PANTHER - 105 593 - -
Viun3g04452 595 CDD PDZ_serine_protease 338 438 - -
Viun3g04452 595 SUPERFAMILY Trypsin-like serine proteases 132 332 IPR009003 -
Viun3g04452 595 Gene3D - 333 445 IPR036034 GO:0005515
Viun3g04452 595 Gene3D - 446 595 IPR046449 -
Viun3g04452 595 FunFam protease Do-like 9 220 330 - -
Viun3g04452 595 FunFam Protease Do-like 9 116 218 - -
Viun3g04452 595 SUPERFAMILY PDZ domain-like 363 445 IPR036034 GO:0005515
Viun3g04452 595 Pfam PDZ domain 339 440 IPR001478 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04452 Viun-Chr3 52296167 52303169 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04452 K25897 - gmx:100791040 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04452 3 52296167 52303169 Viun3g04452 3 52296167 52303169 ECH