Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04448 ATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTTATGAAATTGATGATGAGTGATTATACAGTGGAGACGATAAACGATGGACTTAGTGAATTCAATGTTGAGTTTCATGGTCCAAAAGAAAGTCTTTATGAAGGTGGTGTCTGGAAAATTCGTGTCGAGCTTCCTGATGCTTACCCATATAAATCCCCTTCTATTGGCTTTGTGAACAAAATATTCCACCCTAATGTCGATGAGTTATCTGGCTCTGTATGCTTGGATGTCATTAACCAATCTTGGAGCCCAATGTTTGATCTTCTAAATGTCTTTGAAGTTTTTCTTCCACAACTCCTGCTTTATCCAAATGCTTCAGATCCTCTCAATGGCGATGCAGCATCGTTAATGATGAAGGATAAAAAGTTATATGACCAGAAAGTTAAAGAGTATTGTGAGCGGTATGCTAAGAAGGAAAACATTAGCAACTCTACAGCTGGTGAGGAGAGTGGAGATGAGGAAGACATCAGTGAAGAAGACAGTGGATCTAGTGATGATGACATTCCTGGTCATGCTGATCCTTAA 558 0.3943 MSSPSKRREMDVMKLMMSDYTVETINDGLSEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDKKLYDQKVKEYCERYAKKENISNSTAGEESGDEEDISEEDSGSSDDDIPGHADP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04448 185 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Viun3g04448 185 MobiDBLite consensus disorder prediction 150 185 - -
Viun3g04448 185 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Viun3g04448 185 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Viun3g04448 185 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Viun3g04448 185 CDD UBCc 7 143 IPR000608 -
Viun3g04448 185 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Viun3g04448 185 SMART ubc_7 4 148 - -
Viun3g04448 185 SUPERFAMILY UBC-like 4 150 IPR016135 -
Viun3g04448 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Viun3g04448 185 MobiDBLite consensus disorder prediction 159 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04448 Viun-Chr3 52273079 52279545 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04448 3 117 Miscellaneous Gene Families AT3G17000 23.577 2.38e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04448 K10576 - gmx:100790685 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04448 3 52273079 52279545 Viun3g04448 3 52273079 52279545 ECH