Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04445 ATGGGGACGACAACAACACCTCTTTCGCACACAGTTAGCGTCTTCAACATTCCTCGCTCCGCCACCGCCAAGGACCTCCTCCACTTCCTCGAATCCAAGGTGGGTCCTTCCACCGTCTTCGCCCTCGAAATCTTCTCCGACAACCCCAACTGGAAGTCCCGCGGCGCCGGCCGCGTCCAGTTCGAGACCCTCGACGCCAAGTCCTGCGCCCTCTCTCTCTCCAACCTTCAACAACTGCTCATCCACTCCCACTTCCTCCGCCTCTCCGATGCCTCCGAAGACATCATCTTCCGCCCCCTCCACCGCCTTCAAAATGGTGTCCTCTACGCCGGCTTCATGCTCTCCGACCACCGCATGAGCGTTCTCGACTCCTGGGAGGGCGTTGCGGGGTTGGTAGTGCCCCAAAGGAGGAAGCTTGACTTCTTGGTGTGGCATGATGGCGACTGTTACCGACTCGAGATTTTTTTTGAGGATATTTTGGAGACTCATGGCTATTGTTTGGGAGAAGAAGCCAAGCTCAATGCCATTCTCGTGAAGCTTAAATTTGGGCCAAGGATTTATAAGAAAAAGACGGGGCCAGATGTGGCAACCAAGTTTAAGAGTGATAGGTACCATTTTTGTAAGGAGGATTCTGAGTTTCTTTGGGTGCGGACAACTGACTTTTCGGCTCTGAAGTCAATTGGGCACTCTACTTCATTTTGTTGGGAAATTGCGGAAGAACATTTGGCTTCTGATGTTTTTACAAGTTTCCCGCTCTACACGGAAAATTTGAGAGATTTGGCTCTGGAGGATGGGGAAGAATTCTGTTCTTCCACGGAAGCAGTTCCTCTTGTAAAGTGTGAGTCGCAATCCAAGTTACCCTACGAGGCCCTTTTCCAGTTGAATTCTCTTGTTCATACTCAAAAACTTAGTCTTGCTTCGGTGGATGATGAATTGATTGACTTGTTGGGAGGCTTAGATGAAGAAATTAGAGCTGTGATTTTTCAGAAATTGCACCAGATGGGCTTCACTTGTTACGAGCCTCTTAAATTCGTGAAGACTCAGTTGCATGTGCTGAGTAATAAGAAAAAAGGTCCACCACAATCTTCACAGAAAAGGTTGACAGATAATAACATTATGAGCTGTCATAGAGCCTTGATTACCCCAACGAAGATTTATTGCCTTGGTCCTGAGCTTGAAACGTCAAACCATGTGGTGAAGCACTTTGCATCCCATGCCTCAGACTTCATGAGGATTACCTTTGTTGAAGAGAATTGGAATAAGCTTCCAAATTATGCAGTATCGACTGGTGTGCAAAAGGGAATATTTTCAAAGCCTTCTAAAACTGAAATATATAATCGAATATTGACTATTCTTCGAGATGGGATTGTTATTGGATCAAAGAGATTTGAGTTCCTGGCCTTCTCTGCCAGTCAGCTGCGATCAAATTCTGTTTGGTTATTTGCTTCTAATGACAATTTGAAAGCAACAGATATCAGAGAATGGATGGGATGCTTCAACAATATCCGCAGTGTTTCTAAATGTGCAGCGAGGATGGGTCAGTTGTTCAGTTCTTCCATGCAAACTTTTGAAGTGGCCCCTCAAGATGTAGAGATAATTCCAGATATTGAAGTTACCACTGATGGTGTAAGCTACTGTTTCTCAGATGGTATCGGAAAAATTTCCCAATCTTTTGCTAGGCAAGTTGCTCAAAAGCTGAAGTTAGATCATAGTCCTTCAGCATTTCAAATTCGGTTTGGAGGATTTAAAGGTGTCATTACTGTTGATCGCCATTCCTTTAGGAAGTTATCATTGCGCAAAAGCATGCTTAAGTTTGAATCCAAAAATAGGATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGCTGTCTACCTTAGGAGTAAACGATGAAGCCTTTTTGGCAAGGCAACAGGACCAATTGAATTTGTTGGGAAAGATGTTGACTGATAGTAAGGCAGCTTTGGATGTTTTGGAAAGTTTGAACGGGGCTGATTCAAGAAGCATTCTAGTGAAGATGTTGCATGAATTTAATGAGCCAAACAGTGAGCCTTACCTATCAATGATGCTTAAGGCTTACTATGCATACCAATTATCTGACTTGAAAACTAGATGCCGAATATTTGTTCCCAAGGGTCGGGTCTTAGTAGGTTGCTTGGATGAAACTGGTATCTTGAATTATGGTCAAGTATTTGTCCGTGTAACAGTGAAAAAAACAACAGAAAACTTTGATGACAACTTAAGGAAAGTGGATGATGATGATACCACACGTATAGTAGTCGGAAAGGTGGTGGTCACGAAAAATCCTTGTCTTCACCCTGGAGACGTAAGAGTCCTTGATGCCATTTACAATGAAGAATTAGAGGAAAAGGGATTGAAGGATTGTCTTGTATTTCCACAAAACGGACATAGGCCCCATCCAAATGAATGCTCTGGAGGTGATCTCGACGGAGATTTGTTTTTCATAAGCTGGGACAATGATCTAATACCATGTCAAACTGAGGCTCCAATGGACTACACAGGACGTAGACCTCGTATAATGGATCATAAGGTGACCCTAGAGGAAATCCAACAATTTTTCGTGGATTACATGATCAATGATACTTTGGGTGCTATCTCCACCGCCCATCTAGTTCACGCCGACCGTGAACCAGATAAGGCCAAGAGTAGAAAATGTCTGGAGTTAGCAGAGCTTCACTCCATGGCTGTTGATTTTGCAAAGACAGGAGCACCTGCTGCAATGCCAAGAGTTTTGAAACCAAGAGAGTTTCCAGATTTCATGGAGAGGGTGGACAAGCCTATGTACATCTCCAAGGGGGTACTAGGAAAACTTTATCGTGCTATAATTGAGTCTCAACTGCAAATAAAATATAGTTTTGTATGGTCAGAGAAGCTTGCTGAAGAAGCATATGATCGTAGCTTTGAAGTGAATGGTTTTGAGGCCTTCCTTGAGACAGCCTCAAGTCACAAAGAAATGTACGCAGAGAAGATGAGTAGTTTGATGAACTTCTACGGTGCCGAGACTGAGGATGAAATGCTACTTGGTAACTTGCAAAACCGTGCTTCATATTTGCAGCGTGATAACAGGAGATATGGTGATATGAAAGATCGGATTCTGCTCTCAGTGAAGAATCTGCAGCACGAAGCTAAAGAATGGTTTGAAACTAGTTGCCAGCCGCAGGAGTATCGTCCTATGGCTTCTGCATGGTATCATGTGACCTATCACCCCAGCTATTATAGCCAGGAAAGCTCGTGTTTTCTTAGCTTCCCATGGATAGTTGGTGAGATTTTGTTGCAGATAAAGTCTGTAAATAAAGTAGTTCAAGGATGA 3360 0.4375 MGTTTTPLSHTVSVFNIPRSATAKDLLHFLESKVGPSTVFALEIFSDNPNWKSRGAGRVQFETLDAKSCALSLSNLQQLLIHSHFLRLSDASEDIIFRPLHRLQNGVLYAGFMLSDHRMSVLDSWEGVAGLVVPQRRKLDFLVWHDGDCYRLEIFFEDILETHGYCLGEEAKLNAILVKLKFGPRIYKKKTGPDVATKFKSDRYHFCKEDSEFLWVRTTDFSALKSIGHSTSFCWEIAEEHLASDVFTSFPLYTENLRDLALEDGEEFCSSTEAVPLVKCESQSKLPYEALFQLNSLVHTQKLSLASVDDELIDLLGGLDEEIRAVIFQKLHQMGFTCYEPLKFVKTQLHVLSNKKKGPPQSSQKRLTDNNIMSCHRALITPTKIYCLGPELETSNHVVKHFASHASDFMRITFVEENWNKLPNYAVSTGVQKGIFSKPSKTEIYNRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKATDIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVAPQDVEIIPDIEVTTDGVSYCFSDGIGKISQSFARQVAQKLKLDHSPSAFQIRFGGFKGVITVDRHSFRKLSLRKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGVNDEAFLARQQDQLNLLGKMLTDSKAALDVLESLNGADSRSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKTRCRIFVPKGRVLVGCLDETGILNYGQVFVRVTVKKTTENFDDNLRKVDDDDTTRIVVGKVVVTKNPCLHPGDVRVLDAIYNEELEEKGLKDCLVFPQNGHRPHPNECSGGDLDGDLFFISWDNDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLYRAIIESQLQIKYSFVWSEKLAEEAYDRSFEVNGFEAFLETASSHKEMYAEKMSSLMNFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVKNLQHEAKEWFETSCQPQEYRPMASAWYHVTYHPSYYSQESSCFLSFPWIVGEILLQIKSVNKVVQG 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04445 1119 SUPERFAMILY RNA-binding domain, RBD 7 94 IPR035979 GO:0003676
Viun3g04445 1119 CDD RRM_SF 12 66 - -
Viun3g04445 1119 Pfam RNA dependent RNA polymerase 380 958 IPR007855 GO:0003968
Viun3g04445 1119 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 93 IPR000504 GO:0003723
Viun3g04445 1119 PANTHER RNA-DEPENDENT RNA POLYMERASE 10 1111 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04445 Viun-Chr3 52258029 52262659 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04445 K11699 - gmx:100808274 2006.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04445 3 52258029 52262659 Viun3g04445 3 52258029 52262659 ECH