Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04393 ATGCCATCAACAGGGAGGGATCAAAGGATTGTCCGCAGAATGGCAAACTTTCCTCGAAGCATAATGGAGGGTATTTCAAGGGCAATGGAGGATGGTATAGGCTTTATAGGAAGAGGAAGAGGAAGAAGAAGAAATCATGGTGCTAATTTTCCTTTGCAGGCTCAAGAACATGTTCCACAATCACATGATCAAGTAGTGGTTCAGGAGGAATGGAGTTTTCTGGAGAGTTTTGAGCAGCAATATGGCACCAAACACCCTTTCTTTTATGCTTGCCGTCTCGGGGAAGCCATGAAATTAGCAGAAGAAGATCACAAGTTCTTGTTCATGTACCTCCACTCACCTGACCACCCTTTTGCAAACGTGTTCTGCAAGGAAACACTGTGTTCGGAGGCGGTGATTCAGTTTCTTGACGTGAATTTTGTTTGCTGGGGAGGACTTGCATATAGAGGAGAGGGCTTGCAAATGGTTGCAACGCTTAGCCCTGACACCTTTCCCTGTTGTGCTGTAATAGCCCCTACTCCGGGTGAGAGCATAGCAGTTCTGCAACAGCTAGAAGGACCTCTTTCACCGGCCGAGCTAGTGGGGATTCTACAAAGAACATTGGAAGAACAAGGGGTGGCTTTCGGAAGTGCTAAAGCTAAGCAGGAAGAAAAGATTCGAGCAGACCGTAGGCTTAGAGAAGAACAGGATGCTGCATATCTTGCAGCTTTGAAAATTGACAAGGAAAAAGAGAAACTCAATAATTTAGCTTCAAGAGAGGGAGTTCAGAGCACCAAAAATTATGGGAAACTGATAAACAATTCTATGAATGTGACTAAACAGAACAGCAGAGTGAATGAGTCCACTAAGGGAGTTGCAAGTAAAGGAATGGAGTCTCAACCCACGCAGATACTGATAAGGTTTCCGAACGGGGAAAGAAGAGAGCATAGTTTCCTTTGCACAGACAAAATCCAATCCATTTTCTCATACATTGATTCATTAGGAATGGCAGGGATTGGAAACTACAGATTGATATCAAACTTCCCAAGAAGAGCTTATGGTGTTGACCAAATGAGAATGAGTCTAAAAGAAGCTGCCTTGTATCCTAAGGCTAGTGTGTTCGTGGAGCCTTTGGGAGCTAGAGTCCCATAA 1131 0.443 MPSTGRDQRIVRRMANFPRSIMEGISRAMEDGIGFIGRGRGRRRNHGANFPLQAQEHVPQSHDQVVVQEEWSFLESFEQQYGTKHPFFYACRLGEAMKLAEEDHKFLFMYLHSPDHPFANVFCKETLCSEAVIQFLDVNFVCWGGLAYRGEGLQMVATLSPDTFPCCAVIAPTPGESIAVLQQLEGPLSPAELVGILQRTLEEQGVAFGSAKAKQEEKIRADRRLREEQDAAYLAALKIDKEKEKLNNLASREGVQSTKNYGKLINNSMNVTKQNSRVNESTKGVASKGMESQPTQILIRFPNGERREHSFLCTDKIQSIFSYIDSLGMAGIGNYRLISNFPRRAYGVDQMRMSLKEAALYPKASVFVEPLGARVP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04393 376 SMART 45neu3 72 198 IPR006577 -
Viun3g04393 376 ProSiteProfiles UBX domain profile. 290 368 IPR001012 GO:0005515
Viun3g04393 376 SUPERFAMILY Ubiquitin-like 288 371 IPR029071 -
Viun3g04393 376 PANTHER FAS-ASSOCIATED PROTEIN 8 369 - -
Viun3g04393 376 Gene3D - 290 370 - -
Viun3g04393 376 CDD UAS 93 203 - -
Viun3g04393 376 SMART ubx_3 287 370 IPR001012 GO:0005515
Viun3g04393 376 Pfam UBX domain 292 370 IPR001012 GO:0005515
Viun3g04393 376 SUPERFAMILY Thioredoxin-like 68 206 IPR036249 -
Viun3g04393 376 CDD UBX 297 369 - -
Viun3g04393 376 Gene3D Glutaredoxin 60 206 - -
Viun3g04393 376 Coils Coil 211 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04393 Viun-Chr3 51779864 51781553 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04393 K18726 - gmx:100775212 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04393 3 51779864 51781553 Viun3g04393 3 51779864 51781553 ECH