Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04382 ATGGGAATGATGGAAGAGGAGAGTAGCAACAGCAACATAGAAGGTGGAGCTTCGCTGCCATCGTCAGGTTCAGACGCCAAGAAGCGAAGAGTTACGTACTTTTACGAACCAACTATCGGCGATTACTACTACGGCCAGGGCCACCCAATGAAGCCGCACCGCATCCGCATGGCGCACAACCTTATCGTCCACTACTCCCTCCACCGCCGCATGGAGATTAACCGCCCTTTCCCAGCATCACCCAACGACATTCGCCGCTTTCACTCAGATGACTACGTCCACTTCCTCTCTTCCGTCTCTCCCGAGACCCTCGCCGACACCACCTTCTCGCGTCAACTCAAGCGCTTCAACGTCGGCGAGGACTGCCCTGTCTTCGATGGCCTCTTCGACTTCTGTCAGGCTTCCGCTGGCGGCTCCATCGGCGCCGCCGTCAAACTCAACCGCGGCGACGCCGACATCGCCATCAATTGGGCCGGCGGTCTCCACCACGCTAAGAAATCCGAAGCCTCTGGATTCTGTTACGTCAACGACATTGTTCTCGGTATCCTCGAGCTTCTTAAAGTTCACAGGCGAGTTCTGTATGTTGACATTGATGTTCACCATGGTGATGGGGTCGAGGAGGCCTTTTACACCACTGATAGAGTGATGACAGTCTCTTTTCACAAGTTTGGTGACTTTTTCCCTGGCACAGGGCATATCAAAGACATTGGGGTGGGCTCGGGAAAGAACTATGCTGTCAATGTCCCATTAAACGACGGAATGGATGATGAGAATTTTCGTGGTCTGTTTCGAACTGTCATTCATAAAGTCATGGAGGTTTATCAACCTGAGGCAGTTGTTCTTCAATGTGGAGCTGATTCATTGTCTGGTGACAGGTTGGGTTGCTTCAACTTGTCTGTCAAAGGTCACGCAGATTGCCTTCGATTCCTTAGATCTTTCAATGTTCCTTTAATGGTTTTGGGTGGTGGTGGATATACAATTCGGAATGTTGCCCGCTGTTGGTGTTATGAGACAGCAGTGGCAGTAGGAGTGGAGCCTGACAATAAGTTGCCTTATAATGAATATTATGAATATTTTGGTCCAGATTATACTCTCTATGTCGATCCAAGCAACATGGAGAACCTAAACACACCCAAGGATATGGAAAAAATAAGGATCACACTGCTAGAACAGATTTCCCGACTTCCCCATGCTCCCAGTGTACCTTTTCAGACAACACCACCTACCTTAGAAATTCCAGAAGAGGCGGAAGAAGACATGGATAGAAGACCAAAACTTCGCAAATGGGATGGTGAAGATTATGATTCTGACCCTGATGAAGGTGAAAAAGCTAATTCCAAGTTCTCAAGTGTCACTGCCCATATGAGGGATATTGCAGATGACATGGAAGAAGAGAAGCCAGGAGTGCATTCATCGTCTTGTTGTTGA 1428 0.4881 MGMMEEESSNSNIEGGASLPSSGSDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPASPNDIRRFHSDDYVHFLSSVSPETLADTTFSRQLKRFNVGEDCPVFDGLFDFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGSGKNYAVNVPLNDGMDDENFRGLFRTVIHKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLYVDPSNMENLNTPKDMEKIRITLLEQISRLPHAPSVPFQTTPPTLEIPEEAEEDMDRRPKLRKWDGEDYDSDPDEGEKANSKFSSVTAHMRDIADDMEEEKPGVHSSSCC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04382 475 PRINTS Histone deacetylase superfamily signature 276 286 IPR000286 -
Viun3g04382 475 PRINTS Histone deacetylase superfamily signature 159 182 IPR000286 -
Viun3g04382 475 PRINTS Histone deacetylase superfamily signature 191 206 IPR000286 -
Viun3g04382 475 SUPERFAMILY Arginase/deacetylase 29 393 IPR023696 -
Viun3g04382 475 Gene3D Histone deacetylase domain 27 402 IPR037138 -
Viun3g04382 475 PIRSF HDAC_I_euk 10 472 IPR003084 GO:0004407|GO:0016575
Viun3g04382 475 MobiDBLite consensus disorder prediction 1 19 - -
Viun3g04382 475 PRINTS Histone deacetylase signature 116 133 IPR003084 GO:0004407|GO:0016575
Viun3g04382 475 PRINTS Histone deacetylase signature 178 194 IPR003084 GO:0004407|GO:0016575
Viun3g04382 475 PRINTS Histone deacetylase signature 83 101 IPR003084 GO:0004407|GO:0016575
Viun3g04382 475 PRINTS Histone deacetylase signature 137 157 IPR003084 GO:0004407|GO:0016575
Viun3g04382 475 PRINTS Histone deacetylase signature 237 250 IPR003084 GO:0004407|GO:0016575
Viun3g04382 475 PRINTS Histone deacetylase signature 254 272 IPR003084 GO:0004407|GO:0016575
Viun3g04382 475 PRINTS Histone deacetylase signature 50 67 IPR003084 GO:0004407|GO:0016575
Viun3g04382 475 CDD HDAC_classI 34 341 - -
Viun3g04382 475 MobiDBLite consensus disorder prediction 397 475 - -
Viun3g04382 475 MobiDBLite consensus disorder prediction 416 444 - -
Viun3g04382 475 PANTHER HISTONE DEACETYLASE 2-RELATED 13 353 - -
Viun3g04382 475 Pfam Histone deacetylase domain 48 339 IPR023801 -
Viun3g04382 475 MobiDBLite consensus disorder prediction 1 25 - -
Viun3g04382 475 FunFam Histone deacetylase 27 406 - -
Viun3g04382 475 MobiDBLite consensus disorder prediction 454 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04382 Viun-Chr3 51621173 51624402 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04382 K06067 - gmx:100807923 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04382 3 51621173 51624402 Viun3g04382 3 51621173 51624402 ECH