Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04371 ATGGAGTCTGCTCTAGTGATCAAGGTGAAATATGGGGATACCCTCAGGCGCTTCACTGCCCGTGTGGACGAGATTAATCGACTGGATCTCGACATGGTTGGGTTGAGACAGAAGATATGTTCTATCTTCGGTTTCAGTGCTGATGCAAATTTAGTTCTGAGATATGTTGATGAAGATGGCGACTTGGTGACTCTGGTTGATGATGATGATTTGCGTGATGTGATGAGGCAGCAATTGAAATTCTTGAAAATTGAGGTACTTATGAGCAATGATGGTGGTGCTAAATCAACTGCGTGGTCTACTGGAAGTACCACTCCCTTAAAATCTCCTTCTGTCACAAACCCACGTCTGGGTAGAAATACTATATTACACGAGGCTCTGTCTAAATTGTCACTTTCAAAAGCGGCATCTTCAACTCCCGTGGTTGATAATATTGCCAATTCAATATTGAAAATAGGACAATCGGTTCTAAATTCTCATTTCCAGCCTCGTGATGCAGCTGATACAATTTCAAAAACGGGTGTTCCTGAAGAACATACCACTTCTAAGGCAAAAGGTTCTCAATCTTCATATGTGGACTCGGCCTCCAATTCTACTGTCCATGGTGAGAGTGCCAATCCCTTAAGATTTCCTGTTTCAAACCCATCTCTGAGCCCAAATGCAGATAAAGTTGACATTTCATCTCCTGTGCCTGATCCAGTACGTGAGCTTGTTTCCAATTTATTGTATCCAAATGCTGCATCTTCTAGTCAGCTGCCTGTTAATCTTGCTGATTTAATTTCCCTAGTGGGACATTCTGTTCTAAATTCTTATTGCCAGCCTCATGTTTCAACTGGTCCATTCTCTAAAAATGGTGTTCCTGAAGAACCTCTCTCTGGTGAAGTCAGAGATCTACAGATGCCATCTGTGGACTTGGCTTCCAATGCCACTCAACATGTGGAGGCTGAAAACCTAATTAGAGATACAGCCTCTGCTTCTAATGCCAATCCACATTGTGAAACAAGAACTCTACGGATGCCATCTGTAGATTTGGCTTCTAATGCCACTCAACAGGTAGAGACTGAAAACATAATTAGAGATGTTGCCAGTCAACATTTGGAAGCTGGGAATGTAATCAGTGCAACAACAGCTGCGGAAGTTGCAACAGTTGATCTCAATATCCCTCCTTGTGATCCTTATTCATCTCAGTCCACAAATGTGAATAAGGGTCCACTTTCATCAGAAGTCCCTGATGGTGATCGCAGGAAGGGTAAAATGTCAACTGTCTATAGTTCTGCTGGTAAGGTTGACAGCAGTGGTACATCATCAAGTCTTCCTGGTCCTAGTAATGACAGTTCAACCCAGAATACTTCATTGAAGGCTGGTGTTTTCTTTGAATGTCCATTTTCTGGGTCATATATTAATTCTTGGACACCACATTTTGGAAACTCTCAAATGCCCCCATTTAAAAGGAGCCATCCTCACACTGAGGCAATGACTGGTATGTTCCACAAAGGCGTGCGTTGTGATGGTTGTGGTGTCTATCCAATAACTGGACCTCGGTTCAAATCCAAAGTGAAGGAAAATTATGATCTCTGCCACATTTGTTACAACGAAATGGGTAATGGGACAGATTATATCAGAATGGACCGCCCGGCATCTGCTCGTTTCCCTCGATGTGTATATGAGCAATCCAAAAACTTTCCAACATTACCGCCACATACTTTTAAGAAAAGTTCCATTTTGAAGCATGGAAGACCAAAGTTAGATAGTCGGTTCATTTTGGATGTCAATGTGCTAGACGGTACGATGATGGCTCCATCTACTGCATTTACAAAGATCTGGCGGATGCGCAATAATGGCACTGTAGCGTGGCCCAAGGGAACTAAACTTGTTTGGATTGGAGGAGACAAGTTTAGTGACTCTCATTCAGTTGACTTAGAGGATGGTGTCCCTATCGAGAAGGAGCTTGACATTGCAGTTGACTTTATAGCACCACGGATACCTGGTCGATACACATCATACTGGAGGTTGGCAACTTCATCTGGACATAAATTTGGCCAACGTGTTTGGGTCCTTGTACAGGTTGATGCCTCTCTCAAGGACTCATTTTATGATAACTCTCAAGGATTGAACTTGAATATTCCACTTGATGTCAGTGGATCTGAAGGACCTCTGCTTATAGATATCAATGTTAGGCCTGCCGAGGATGATACTTTTCTTCAAACCCGCATTCCTAATGCTCCGATTCAACCTGCGGAACAGGTTGATGAGGAACCAAGATTGGAACTGGAAAAGGAATTCCCTATAAATGAAGCTACATTTGTTGGCCCTTCTGCCTCAGCCCCTGCTGCCTCAGCCCCTGTTGCAACCTCCCTTGCACCTTCATCAATCTCTTATCCTATTATTGATTTATCTGAAACAACCCCTGCTGTTCCCTCTAATCAGCAATCCTCCACTGTGGATGTACCATCATCATCTGTTGTAGGGACCGGTGGAATTAACCCTGTGGAGGAGAGTCTACTTAAAGAACTTGAGGCGATGGGTTTTAAGCAGGTTGATTTGAACAAAGAGGTCTTGAGGATGAATGAGTATGATCTGGAGCGATCCATAGACGATCTATGTAGTGATGTCTATGGTGTTTCTGAGTGGGACCCTATCCTTGTAGAGTTACAAGAGATGGGTTTCCGTGACGAAGAGATGAATAAGAGGTTGCTTAAGAAAAACAATGGAAGCATAAAGCGTGTTGTTATGGATTTAATCCAAGGAGAGTAG 2754 0.431 MESALVIKVKYGDTLRRFTARVDEINRLDLDMVGLRQKICSIFGFSADANLVLRYVDEDGDLVTLVDDDDLRDVMRQQLKFLKIEVLMSNDGGAKSTAWSTGSTTPLKSPSVTNPRLGRNTILHEALSKLSLSKAASSTPVVDNIANSILKIGQSVLNSHFQPRDAADTISKTGVPEEHTTSKAKGSQSSYVDSASNSTVHGESANPLRFPVSNPSLSPNADKVDISSPVPDPVRELVSNLLYPNAASSSQLPVNLADLISLVGHSVLNSYCQPHVSTGPFSKNGVPEEPLSGEVRDLQMPSVDLASNATQHVEAENLIRDTASASNANPHCETRTLRMPSVDLASNATQQVETENIIRDVASQHLEAGNVISATTAAEVATVDLNIPPCDPYSSQSTNVNKGPLSSEVPDGDRRKGKMSTVYSSAGKVDSSGTSSSLPGPSNDSSTQNTSLKAGVFFECPFSGSYINSWTPHFGNSQMPPFKRSHPHTEAMTGMFHKGVRCDGCGVYPITGPRFKSKVKENYDLCHICYNEMGNGTDYIRMDRPASARFPRCVYEQSKNFPTLPPHTFKKSSILKHGRPKLDSRFILDVNVLDGTMMAPSTAFTKIWRMRNNGTVAWPKGTKLVWIGGDKFSDSHSVDLEDGVPIEKELDIAVDFIAPRIPGRYTSYWRLATSSGHKFGQRVWVLVQVDASLKDSFYDNSQGLNLNIPLDVSGSEGPLLIDINVRPAEDDTFLQTRIPNAPIQPAEQVDEEPRLELEKEFPINEATFVGPSASAPAASAPVATSLAPSSISYPIIDLSETTPAVPSNQQSSTVDVPSSSVVGTGGINPVEESLLKELEAMGFKQVDLNKEVLRMNEYDLERSIDDLCSDVYGVSEWDPILVELQEMGFRDEEMNKRLLKKNNGSIKRVVMDLIQGE 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04371 917 CDD UBA_NBR1 830 868 - -
Viun3g04371 917 Pfam Ig-like domain from next to BRCA1 gene 591 689 IPR032350 -
Viun3g04371 917 MobiDBLite consensus disorder prediction 424 448 - -
Viun3g04371 917 SUPERFAMILY RING/U-box 491 547 - -
Viun3g04371 917 MobiDBLite consensus disorder prediction 174 223 - -
Viun3g04371 917 SUPERFAMILY UBA-like 877 915 IPR009060 GO:0005515
Viun3g04371 917 MobiDBLite consensus disorder prediction 95 116 - -
Viun3g04371 917 FunFam protein NBR1 homolog 876 917 - -
Viun3g04371 917 SUPERFAMILY CAD & PB1 domains 4 79 - -
Viun3g04371 917 Pfam PB1 domain 6 77 IPR000270 GO:0005515
Viun3g04371 917 Gene3D - 823 870 - -
Viun3g04371 917 CDD NBR1_like 580 690 IPR032350 -
Viun3g04371 917 ProSiteProfiles Zinc finger ZZ-type profile. 497 547 IPR000433 GO:0008270
Viun3g04371 917 SMART PB1_new 4 89 IPR000270 GO:0005515
Viun3g04371 917 MobiDBLite consensus disorder prediction 392 448 - -
Viun3g04371 917 Gene3D - 873 917 - -
Viun3g04371 917 Pfam Zinc finger, ZZ type 497 532 IPR000433 GO:0008270
Viun3g04371 917 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 829 870 IPR015940 -
Viun3g04371 917 CDD UBA_NBR1 876 914 - -
Viun3g04371 917 Gene3D - 1 88 - -
Viun3g04371 917 ProSiteProfiles PB1 domain profile. 4 86 IPR000270 GO:0005515
Viun3g04371 917 MobiDBLite consensus disorder prediction 169 223 - -
Viun3g04371 917 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 3 916 - -
Viun3g04371 917 Gene3D - 489 550 IPR043145 -
Viun3g04371 917 Gene3D Immunoglobulins 577 693 IPR013783 -
Viun3g04371 917 FunFam next to BRCA1 gene 1 protein-like 578 694 - -
Viun3g04371 917 SMART zz_5 496 541 IPR000433 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04371 K17987 - cave:132173805 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04371 3 51437119 51441818 Viun3g04371 3 51437119 51441818 ECH