Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04338 ATGAACCATTCCGAAAAGTTCCAACAACGGTGCGTGGCTTCCCTCAAAACCCTAACACCCCACATCACCTGTCTCGCGGTCCACCGTAACCTCCTCTACGCCGCCTCCCTAAATCTCATCAACGTCTTCGACCTCTCGCATTACACCCACATCGACGCCTTCAACCAAAGCCCTGCCTCAGGCTTTGTCAAGTCCATCGCCTTCACCAACTCAAGGGTTTTCACCGCTCACCAAGACCGCAAGATTCGCGTCTGGCTCATCACTCCCTCCAAACGACATCGTCTCCTCTCCTCCCTCCCCACCGTCACCGACCGTCTCCGTCGCTGCATCGTTCCGCGAAACTACGTCAGCGTGCGCCGCCACAAGTCCAGGCTCTGGATCCAGCATTGCGACACCGTCTCCGGTTTAGCCGTGAACCAGAGGCTCATGTATTCGGTTTCGTGGGATAAGAGCTTTAAGGTCTGGGACTTGTTCAGTTTCCGATGTTTGGAGTCCGTCAAAGCGCATGAGGACGCGATCAACGCTCTGGTTGTTAACCGAGATGGCACCGTATATACGGCATCCACGGATGGGAGCATCAAGGTTTGGAGAAGGGACTGCGAGGCGAAACGGCACGTGTTGGTGAGCACCATTGGGAGGCAGAAGTCGACGGTGAATGCGCTTGCGTTGGACGGCGGGGGCGCGGGCTTGTTTTCCGGCGGTTGCGACGGCGAAATATGCCGGTGGGAGTGGGGGTGTGAGGAAAACGGCGCGGTGAAGATGGAGACGTTGAGGGGTCACAGTGGAGCCATACTGTGTCTTATCCACGTGGCTGGTTTGTTGGCGAGTGCGTCCGCGGATCTAACGGTTAGGATCTGGCAACGGGAGAGAGGGAGGAGTGGGTATAGTTGCAGGGCGGTGTTGGAAGGGCACGAGAAACCGGTGAAGTCGTTGGTGGCCTTTCCGGGAGGTGACGATGACTCAAACGGCGTCGTTAGGCTATTCAGCGGAAGCCTAGACGGGGAGATTAAGGTGTGGGAGTTGTTTGGTTCGGCCCGATTCTGCGTGCCTAATTAA 1056 0.5691 MNHSEKFQQRCVASLKTLTPHITCLAVHRNLLYAASLNLINVFDLSHYTHIDAFNQSPASGFVKSIAFTNSRVFTAHQDRKIRVWLITPSKRHRLLSSLPTVTDRLRRCIVPRNYVSVRRHKSRLWIQHCDTVSGLAVNQRLMYSVSWDKSFKVWDLFSFRCLESVKAHEDAINALVVNRDGTVYTASTDGSIKVWRRDCEAKRHVLVSTIGRQKSTVNALALDGGGAGLFSGGCDGEICRWEWGCEENGAVKMETLRGHSGAILCLIHVAGLLASASADLTVRIWQRERGRSGYSCRAVLEGHEKPVKSLVAFPGGDDDSNGVVRLFSGSLDGEIKVWELFGSARFCVPN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04338 351 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Viun3g04338 351 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Viun3g04338 351 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Viun3g04338 351 ProSitePatterns Trp-Asp (WD) repeats signature. 327 341 IPR019775 -
Viun3g04338 351 Pfam WD domain, G-beta repeat 255 286 IPR001680 GO:0005515
Viun3g04338 351 Pfam WD domain, G-beta repeat 296 339 IPR001680 GO:0005515
Viun3g04338 351 Pfam WD domain, G-beta repeat 161 196 IPR001680 GO:0005515
Viun3g04338 351 SMART WD40_4 49 86 IPR001680 GO:0005515
Viun3g04338 351 SMART WD40_4 250 287 IPR001680 GO:0005515
Viun3g04338 351 SMART WD40_4 204 243 IPR001680 GO:0005515
Viun3g04338 351 SMART WD40_4 294 340 IPR001680 GO:0005515
Viun3g04338 351 SMART WD40_4 120 156 IPR001680 GO:0005515
Viun3g04338 351 SMART WD40_4 159 197 IPR001680 GO:0005515
Viun3g04338 351 SMART WD40_4 8 44 IPR001680 GO:0005515
Viun3g04338 351 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 196 - -
Viun3g04338 351 Gene3D - 112 346 IPR015943 GO:0005515
Viun3g04338 351 Gene3D - 5 109 IPR015943 GO:0005515
Viun3g04338 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 196 IPR001680 GO:0005515
Viun3g04338 351 FunFam BnaA09g28200D protein 116 201 - -
Viun3g04338 351 SUPERFAMILY WD40 repeat-like 9 342 IPR036322 GO:0005515
Viun3g04338 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 296 IPR001680 GO:0005515
Viun3g04338 351 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 7 341 IPR045182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04338 Viun-Chr3 51213835 51215193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04338 158 340 Acyl Lipid Metabolism Gene Families AT3G18860 26.984 6.58e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04338 - - gmx:100811392 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04338 3 51213835 51215193 Viun3g04338 3 51213835 51215193 ECH