Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04312 ATGGACCAGGGAACCCATCCTACGCCGGGAGTGACTGAATCTTTCTATGATGTACCAGATGGAGTTGATATTCTGGGAAGATATGATGAAGAGTTTGCAAAAATCCTGACAAAAGATGCTTTGAAATTTGTTGCAGACCTGCAACGTGAGTTCAGGAGCGATATCAAGTTTGCACTAGAGAAGAGAAAAGAGGCCAAGAAGAGGTTCAATGAAGGGGCTCTTCCGGGGTTTGATCCTGCCACTAGCCACATCAGGGAAGAGGAATGGGTATGTGCTCCTGTTCCACCAGCTGCTGCAGATAGGAAAGTGGAGATCACTGGCCCTGTTGACAGAAAGATGGTCATCAATGCTCTTAACTCTGGAGCTAAAGTTTTTATGGCTGATTTTGAAGATGCACTGTCACCCAGCTGGGAAAATCTCATGAGCGGCCAAGTGAACTTGAAGGATGCTTTGGATGGGACCATAAGTTTCCATGACAAAGTAAGAAACAGGGTTTACAAGCTCAATGAACAGACAGCAAAGCTTTTTGTGCGACCAAGAGGTTGGCACCTACCCGAAGCACATATTCTGATTGATGCTGAACCTGCAACTGGTTGCCTGGTTGATTTTGGCCTCTACTTCTACCACAATCACTCAGCATTTCGACGCACTCAAGGGGCTGGTTTCGGCCCTTTCTTTTATCTTCCCAAAATGGAGCATTCAAGGGAAGCTAAGATATGGAACAGCGTGTTTGAGAAGGCCGAGAATGTGGCAGGCATCGAAAGAGGAAGCATAAGGGCGACGGTTCTGATAGAAACCCTTCCTGCAGTGTTTCAAATGAACGAAATTCTGTATGAGCTGAAGGAGCACTCTGTGGGTCTGAACTGTGGGCGTTGGGATTACATTTTCAGCTACGTGAAGACCTTCCAAGCTCACCCAGATCGCCTCCTACCAGATAGGGTGCAGGTTGGCATGACTCAACACTTCATGAAAAGCTACTCTGATCTCCTTATCAGGACCTGTCACAGGCGCGGTGTGCATGCTATGGGAGGAATGGCAGCTCAGATTCCAATCAAAGATGACCCAGTGGCGAATGAGGCAGCACTGGAACTTGTAAGGAAGGACAAGCTGAGGGAAGTGAAGGCAGGGCACGATGGAACTTGGGCTGCACACCCTGGTCTCATTCCGACCTGCATGGAGGTTTTCAACAACATCATGAGCAATGCTCCTAACCAGATAGAGACAGTGAAACGCGAAGATGCTGCAAACATAACTGAAGAGGACCTCTTGCAGATACCAGTAGGAGTCCGAACTGAGGAAGGTCTACGGTTAAACACAAGGGTGGGGATTCAGTACTTGGCAGCATGGCTGAGTGGAAGCGGTTGCGTGCCTCTTTACAACCTGATGGAAGATGCTGCGACTGCTGAGATTAGCAGGGTGCAGAACTGGCAGTGGCTCAAGTATGAAGTGGAACTCAATGGGGATGGAGTTGGAGAGAAAGTGAAGAAAGAGCTTTTTGATAGAGTGGTTGAAGAAGAGATGGGAAGGATTGAAAAGGAAGTGGGAACGGAGAAGTTCGAGAAGGGAAAGTACAAGGAGGCTTGTAAGATCTTTGCTCGCCAATGCACGTCCCCAGAACTTGATGATTTTCTCACTCTGGAGGCCTATGATTACATAATCCTGCATCGCCCTAAGTAA 1677 0.4794 MDQGTHPTPGVTESFYDVPDGVDILGRYDEEFAKILTKDALKFVADLQREFRSDIKFALEKRKEAKKRFNEGALPGFDPATSHIREEEWVCAPVPPAAADRKVEITGPVDRKMVINALNSGAKVFMADFEDALSPSWENLMSGQVNLKDALDGTISFHDKVRNRVYKLNEQTAKLFVRPRGWHLPEAHILIDAEPATGCLVDFGLYFYHNHSAFRRTQGAGFGPFFYLPKMEHSREAKIWNSVFEKAENVAGIERGSIRATVLIETLPAVFQMNEILYELKEHSVGLNCGRWDYIFSYVKTFQAHPDRLLPDRVQVGMTQHFMKSYSDLLIRTCHRRGVHAMGGMAAQIPIKDDPVANEAALELVRKDKLREVKAGHDGTWAAHPGLIPTCMEVFNNIMSNAPNQIETVKREDAANITEEDLLQIPVGVRTEEGLRLNTRVGIQYLAAWLSGSGCVPLYNLMEDAATAEISRVQNWQWLKYEVELNGDGVGEKVKKELFDRVVEEEMGRIEKEVGTEKFEKGKYKEACKIFARQCTSPELDDFLTLEAYDYIILHRPK 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04312 558 NCBIfam malate synthase A 35 552 IPR006252 GO:0004474|GO:0006097
Viun3g04312 558 Gene3D Malate synthase, domain 3 18 428 IPR046363 -
Viun3g04312 558 Gene3D Malate synthase, domain III 429 553 IPR044856 -
Viun3g04312 558 CDD malate_synt_A 35 552 IPR006252 GO:0004474|GO:0006097
Viun3g04312 558 FunFam Malate synthase 429 553 - -
Viun3g04312 558 PANTHER MALATE SYNTHASE 16 556 IPR006252 GO:0004474|GO:0006097
Viun3g04312 558 ProSitePatterns Malate synthase signature. 281 296 IPR019830 GO:0004474|GO:0006097
Viun3g04312 558 Pfam Malate synthase 23 553 IPR001465 GO:0004474|GO:0006097
Viun3g04312 558 PIRSF Malate_synth 13 554 IPR006252 GO:0004474|GO:0006097
Viun3g04312 558 FunFam Malate synthase 18 428 - -
Viun3g04312 558 SUPERFAMILY Malate synthase G 16 553 IPR011076 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04312 Viun-Chr3 50898761 50901668 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04312 K01638 - gmx:100782820 1024.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04312 3 50898761 50901668 Viun3g04312 3 50898761 50901668 ECH