Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04258 ATGGCAAAGAATGTGGGGATTCTCGCTATTGACATCTACTTCCCTTCTACTTGTATTCAACAGGAAGTGCTTGAGGCTCATGATGGTGCCAGTAAAGGGAAATATACCATTGGACTTGGTCAAGATTGCATGGCGTTTTGTACAGAAGTAGAAGATGTCATTTCGATGAGTTTGACAGTAGTTTCTTCCCTTCTGGAGAAGTATAAGATAGACCCTAAACAAATTGGTCGGCTGGAAGTAGGTAGTGAGACTGTGATTGACAAAAGCAAATCCATCAAAACTTTCCTAATGCAGATCTTTGAGAAATATGGAAATAGCGATATCGAGGGTGTTGATTCAACAAATGCATGCTATGGAGGAACTGCTGCTTTGTTCAATTGTGTGAATTGGGTGGAGAGCAGCTCATGGGATGGGCGATATGGACTTGTTGTTTGCACAGACAGCGCTGTATATGCTGAAGGACCTGCTCGGCCTAGTGGTGGAGCTGGCGCTGTTGCCATGCTAATTGGTCCTGATGCTCCCATTGCTTTTGAAACCAAATTGAGAGGAAGTCATATGGCTCATGCGTATGACTTTTACAAGCCAAATCTTGCCAGTGAATATCCAGTTGTTGATGGAAAGCTTTCTCAAACTTGTTACCTTATGGCCCTTGATTCTTGCTATAATCTCTTAAGTCACAAATATGAGAAACTGGTGGGAAAACAATTTTCTATTTCTGACGCTGAATACTTTGTATTTCATTCTCCATATAACAAGCTTGTACAGAAAAGTTTTGCTCGTTTGGTGTTCAATGACTTCTTGAAAAATCCCAGTTCTGTGGATGCGATTGGCAAAGAAAAGCTGGAACCTTTTGCAACATTATCTGGTGATGAGAGCTATCAAAGTCGGGATCTGGAAAAGGCATCCCAGCAAGTTGCAAAGCCGCAATTCGATGCAAAGGTGCAACCAACCACCTTGATACCAAAGCAAGTTGGCAACATGTACACCGCATCTCTTTATGCAGCTTTTATTTCACTTATTCACAACAAGCATAGCACATTGGACAGTAAGAGGGTGATATTGTTCTCATATGGAAGTGGCTTAACTTCCACAATGTTCTCCTTGCAACTACGTGAAGGTCAATTTCCATTTAACTTGTCAAACATTGTCAAAGTGATGGATGTTGCTGGAAAATTGAAGTCAAGGCATGAGTTTTCGCCGGAGAAATTTGTTGAAACCATGAAGCTAATGGAACGGAGGTACGGTGCGAAGGAGTTTGTAACAAGCAAGGACACAAGCCTTTTATCTGCAGGCACATTCTATCTCACTGAAGTTGACTCCATGTATAGGAGATTCTATGCTAAGAAAAGTAGTGAAAATGATTTGATGAGCAATGGTCACTGA 1383 0.415 MAKNVGILAIDIYFPSTCIQQEVLEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTVVSSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNSDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPSGGAGAVAMLIGPDAPIAFETKLRGSHMAHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYNLLSHKYEKLVGKQFSISDAEYFVFHSPYNKLVQKSFARLVFNDFLKNPSSVDAIGKEKLEPFATLSGDESYQSRDLEKASQQVAKPQFDAKVQPTTLIPKQVGNMYTASLYAAFISLIHNKHSTLDSKRVILFSYGSGLTSTMFSLQLREGQFPFNLSNIVKVMDVAGKLKSRHEFSPEKFVETMKLMERRYGAKEFVTSKDTSLLSAGTFYLTEVDSMYRRFYAKKSSENDLMSNGH 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04258 460 Gene3D - 1 450 IPR016039 GO:0016746
Viun3g04258 460 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 1 450 - -
Viun3g04258 460 SUPERFAMILY Thiolase-like 175 447 IPR016039 GO:0016746
Viun3g04258 460 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Viun3g04258 460 NCBIfam hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Viun3g04258 460 CDD init_cond_enzymes 4 368 - -
Viun3g04258 460 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
Viun3g04258 460 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Viun3g04258 460 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Viun3g04258 460 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04258 Viun-Chr3 50304527 50308446 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04258 K01641 - gmx:100780554 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04258 3 50304527 50308446 Viun3g04258 3 50304527 50308446 ECH
Viun3g04258 3 50304527 50308446 Viun2g02525 2 31503421 31508914 PCT