Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04218 ATGGAGTGGACACCATGTACGGATGAGTACGAGAAGCTCGTAATTCGCATGAGCACTCCCAGGGTTGTCATAGATAATGCCGTGTGCTCCACCGCAACAATAGTCAAGGTTGATAGCGGCAGAAAACATGGGATTCTTTTGGATGCCGTACAAGTGCTTTCTGATCTAAATCTTTCAATTAAGAAGGCTTACATTTCCTCTGATGGAAGATGGTTCATGGATGTTTTTCATGTTACCGATCAAAACGGAAACAAGCTAACCGATCAGAGCGTTTTGAATTATATTGAACAGTCGCTTGGCGGAATTCACAATGGGAGTACAAATGTCTTAAACGGTCTCACTATCCTTGAATTGACCGGCACGGACCGCGTTGGTCTTCTTTCGGAGGTGTTTGCTGTGCTAGCTGAGCAGCAATGTGATGTGGTTAATGCTAAGGTTTGGACTCACAATGGCCGGATTGCCTCCTTAATCTATGTGAAAGACAGCAGTTCTGGGACTCTTATCGAGGATTCTCACAGAATTAAAACCATTGAAGCACGTTTAAGAAATGTTTTAAAGGGTGACAATGATATTAGAAGTGCGAAAACCTCCTTCACCAACGCCGTTGTGCACACAGAAAGAAGGCTGCACCAGATGATGTACGCTGATCGTGATTACCAGAGGAATCCCATTTTCAAGTTTACTTCTGATATCCCAGTAGTCACCGTCCAAAATTGGGCCGAAAGGGGTTATTCGGTTGTGAATGTGCAGTGCAAGGATCGAATTAAACTTTTGTTTGATGTGGTCTGTAATTTGACCGACATGGAATATGTTGTGTTCCATGGAACTGCCAAGACAACAGTTGACCAAGCGTATCTGGAGTTTTATATAAGACACAAGGATGGCACTCCAATTAGTTCAGAACCAGAACGTCATCGTGTGATTCAATGCTTGCAAGCTGCTGTGGAGAGAAGGGCATTTGAGGGTGTTATGCTAGAGTTATGTACGGAGGATAGACAGGGGCTTCTAGCAGAAGTGATGAGAACTTTTCGAGAGAATGGGCTTAATGTGACAAGGGCGGAGATATCTACGATTGGGGACAGGACATCAAATGTGTTTTATGTAACGGATGCGATCGGATACCCTGCGGATCCAAAAATGATCGAATCTGTTAGGCAGAAAGTTGGATTGAGCCATTTAAAAGTGAAGGAGTTAGCATTGGTATGCGAGGAGAAAGCAGAAAGGGAAGATGAAGCAGTTGGGGTTGGTGGGGCAGTGTTGCTGTGTCTGGGGAGCCTCGTGAGAAGGAATCTATACAATTTGGGTTTGATAAAATCGTGCTCTTAA 1326 0.4419 MEWTPCTDEYEKLVIRMSTPRVVIDNAVCSTATIVKVDSGRKHGILLDAVQVLSDLNLSIKKAYISSDGRWFMDVFHVTDQNGNKLTDQSVLNYIEQSLGGIHNGSTNVLNGLTILELTGTDRVGLLSEVFAVLAEQQCDVVNAKVWTHNGRIASLIYVKDSSSGTLIEDSHRIKTIEARLRNVLKGDNDIRSAKTSFTNAVVHTERRLHQMMYADRDYQRNPIFKFTSDIPVVTVQNWAERGYSVVNVQCKDRIKLLFDVVCNLTDMEYVVFHGTAKTTVDQAYLEFYIRHKDGTPISSEPERHRVIQCLQAAVERRAFEGVMLELCTEDRQGLLAEVMRTFRENGLNVTRAEISTIGDRTSNVFYVTDAIGYPADPKMIESVRQKVGLSHLKVKELALVCEEKAEREDEAVGVGGAVLLCLGSLVRRNLYNLGLIKSCS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04218 441 ProSiteProfiles ACT domain profile. 324 403 IPR002912 -
Viun3g04218 441 CDD ACT_ACR_3 244 318 - -
Viun3g04218 441 ProSiteProfiles ACT domain profile. 115 196 IPR002912 -
Viun3g04218 441 Gene3D - 113 188 - -
Viun3g04218 441 CDD ACT_ACR_1 32 100 - -
Viun3g04218 441 SUPERFAMILY ACT-like 29 100 IPR045865 -
Viun3g04218 441 SUPERFAMILY ACT-like 111 186 IPR045865 -
Viun3g04218 441 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 1 397 IPR040217 -
Viun3g04218 441 Gene3D - 321 397 - -
Viun3g04218 441 Pfam ACT domain 324 375 IPR002912 -
Viun3g04218 441 Pfam ACT domain 114 162 IPR002912 -
Viun3g04218 441 SUPERFAMILY ACT-like 322 380 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04218 Viun-Chr3 49861758 49865028 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04218 - - gmx:100794729 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00256 5 1459234 1462214 Viun3g04218 3 49861758 49865028 ECH
Viun3g04218 3 49861758 49865028 Viun3g04218 3 49861758 49865028 ECH