Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04061 ATGGCTCTAACACTTCGTTCTTCAGTTTGTTTTATTAATCAGAAAGAAACCAAAATCCTTAAAACTTCTGATGATGTCCCTGCGATAATTAGTTTTGCAAAGGTTAAGCCATCGTTCCGTCTCCGAGTGAAAAATTCCATGCAAGAAGCACGCCCCACACGCGACAACAGCTCTGAAGCAAGGAGAAACGAAAAATGGGAGAAGGTGCATGCTCCTTCGGTGGCTCATAGTCACAGTGATTCGAAGAGGGTACCTGTGTATGTGATGCTGCCACTAGACACTGTAACAGTGGGAGGAAGCTTGAACAAGCCTAGAGCAATGAATGCAAGTTTGATGGCCCTGAAGAGTGCAGGAGTGGAAGGCGTAATGGTGGATGCTTGGTGGGGTTTGGTGGAAAAAGACGGGCCTTTGAAGTACAATTGGGAACCCTATGTCGAGCTTGTGCAGATGGTACAAATGCATGGTTTGAAGCTTCAAGTTGTTATGTCTTTCCATCAGTGTGGGGGGAATGTTGGAGACACTTGCAGCATTCCTCTACCACCATGGGTGCAGGAAGAAATCAGCAAGAACCCTGACCTGGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCATTGGGCTGTGATTCACTTCCTATTCTAAGAGGAAGGACTCCCCTCCAAGTGTACGCAGACTACATGAGAAGCTTTCGTGACAGATTCGGAGATTACTTAGGCAGCGTTATCGTGGAAATACAAGTTGGCATGGGTCCATGTGGAGAACTGAGATATCCATCGTATCCAGAAGCAAATGGAACTTGGAGGTTTCCCGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAAAGCGTCCTTGGCAGCAGCAGCCGAGGCCATTGGAAAGAAAGAATGGGGAGGAGGTGGACCCCATGACTCTGGCCAGTACAATCAATTTCCTGAGGATACCGGATTTTTCAGAAGGGAAGGGACATGGAACACCGAATATGGACGGTTCTTTCTAGAATGGTACTCTGGTAAATTGCTAGAACATGGTGAGAAGATTCTCGTATCAGCCAAAGGAATATTCGATACATCAGGGGTGAAACTATCAGGGAAAGTTGCTGGAATCCATTGGCACTACAGAGCAAGGTCACACGCAGCTGAACTAACTGCTGGCTACTATAACACGCGAAATAACGATGGGTATATGCCCATAGCCAGAATGCTGGCAAAGCATGGAGTTGTCTTCAATTTCACCTGCATGGAAATGAAAGACAGAGAGCAGCCTGACTTTGCTAACTGCTCACCTGAAGGGTTGGTTAGTCAGGTGAAGATGGCAACAAAAACAGCTAGAGCAGAACTTGCTGGAGAAAACGCATTGGAGAGATATGATGCAGATGCATATGCTCAAGTTTTATCTACAAGTAAATCCGAATCCGGCAACGGATTGGCAGCATTCACTTATCTAAGAATGAACAAGAGGTTGTTTGAAGGTGATAACTGGCGGCACCTGGTGGATTTTGTAAGAAGCATGTCTGAAGGCGGTAGGAGAGAGAGACTTCCGGCGTCTGATTCCCATGGGAGTGATCTTTATGTTGGCCACATCAAATCAACACAGGAGAAGCACACACAAGAGGCCGTTCTTGTGTAA 1641 0.4619 MALTLRSSVCFINQKETKILKTSDDVPAIISFAKVKPSFRLRVKNSMQEARPTRDNSSEARRNEKWEKVHAPSVAHSHSDSKRVPVYVMLPLDTVTVGGSLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWEPYVELVQMVQMHGLKLQVVMSFHQCGGNVGDTCSIPLPPWVQEEISKNPDLVYTDRSGRRNPEYISLGCDSLPILRGRTPLQVYADYMRSFRDRFGDYLGSVIVEIQVGMGPCGELRYPSYPEANGTWRFPGIGEFQCYDKYMKASLAAAAEAIGKKEWGGGGPHDSGQYNQFPEDTGFFRREGTWNTEYGRFFLEWYSGKLLEHGEKILVSAKGIFDTSGVKLSGKVAGIHWHYRARSHAAELTAGYYNTRNNDGYMPIARMLAKHGVVFNFTCMEMKDREQPDFANCSPEGLVSQVKMATKTARAELAGENALERYDADAYAQVLSTSKSESGNGLAAFTYLRMNKRLFEGDNWRHLVDFVRSMSEGGRRERLPASDSHGSDLYVGHIKSTQEKHTQEAVLV 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04061 546 MobiDBLite consensus disorder prediction 44 78 - -
Viun3g04061 546 MobiDBLite consensus disorder prediction 54 77 - -
Viun3g04061 546 Gene3D Glycosidases 76 544 - -
Viun3g04061 546 ProSitePatterns Beta-amylase active site 1. 165 173 IPR018238 GO:0000272|GO:0016161
Viun3g04061 546 Pfam Glycosyl hydrolase family 14 87 504 IPR001554 GO:0000272|GO:0016161
Viun3g04061 546 PRINTS Plant beta-amylase signature 243 252 IPR001371 GO:0000272|GO:0016161
Viun3g04061 546 PRINTS Plant beta-amylase signature 402 412 IPR001371 GO:0000272|GO:0016161
Viun3g04061 546 PRINTS Plant beta-amylase signature 484 498 IPR001371 GO:0000272|GO:0016161
Viun3g04061 546 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 48 517 IPR001554 GO:0000272|GO:0016161
Viun3g04061 546 SUPERFAMILY (Trans)glycosidases 82 511 IPR017853 -
Viun3g04061 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 253 275 IPR001554 GO:0000272|GO:0016161
Viun3g04061 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 364 380 IPR001554 GO:0000272|GO:0016161
Viun3g04061 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 436 458 IPR001554 GO:0000272|GO:0016161
Viun3g04061 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 161 182 IPR001554 GO:0000272|GO:0016161
Viun3g04061 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 118 132 IPR001554 GO:0000272|GO:0016161
Viun3g04061 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 139 157 IPR001554 GO:0000272|GO:0016161
Viun3g04061 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 328 347 IPR001554 GO:0000272|GO:0016161
Viun3g04061 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 381 392 IPR001554 GO:0000272|GO:0016161
Viun3g04061 546 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 399 422 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04061 Viun-Chr3 48286965 48289396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04061 1 546 Glycoside Hydrolase AT4G17090 70.674 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04061 K01177 - gmx:100818063 1032.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04061 3 48286965 48289396 Viun3g04061 3 48286965 48289396 ECH