Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04022 ATGGCCCCGATGCTGGAGAGTGAAAAAGACCCTCCACAACCACCTTCACGTGCCTTTCTGGACACAGTTGAAGAAATCACCACAATTTATAGGTCACTGCCACCTCGACCTTCCATTGAAGAGGTGGAAGCTGCCACGTCCACTGTGGATACCCTCAACAACGACGAACAAACCAAACTTCACGAAATCTCAAAGCAAAAACCCCCTCACGATGTTCCCGAGGACCTCTTCTCTGTCCTGCAGCAACTCAAGAAGACCATGGTCCTTTTCCATACCCACCAACACAGGAGAGAGGCTCTTCAACTTCTTGAGCTCGAAAAAATGTTTCAAACATTCGCTGATCTCATTCAGAGGGCTTCTGAATTGGTCTCTGGAGATACCCAGAAGCAAAGCCTTCCCACTATACCCGAAGAACTCGTAGTGATCACTGACCAAAGTGAAACTTTGGTCAAGGAAGAAGAAGAATCGCAGAAGAATGATTCACAAGTGATACAGCGCTCCTTGTCTACAGGGGGTGGAAGCACTGAGAAATTAAGTCTAATGAAAGTTGCTACTGTTATTGAAAGTTGTGCTGGTAGTGGAGCTACAACCCTTGAACTCAGAGGGAAGTTGGAGGATCAGATGGAATGGTTGCCGGTGTCAATTGGGAAATTATCTGGTGTCACTGAAATGGACCTATCAGAAAACAGAATCATGGCTCTTCCTACAACCATTGTGGGTCTCAAGGCCTTAACAAAGCTTGATCTTCACTCAAACCAGCTTATAAACCTTCCCCATTCATTTGGTGAATTGGTAAACCTTGTTGATCTTGACCTCCACGCCAACAGATTGAAATCACTTCCTGCCACTTTCGGAAACTTGACAAACCTCATTGATCTAGACTTGAGCTCAAATGGGTTCACAAATTTACCAGAGACAATTGGGAATTTGAGCAGCTTGAAGAGACTGAATGCTGAGACCAACGAGCTTGAGGAACTGCCTCACACAATTGGAAATTGCTCATCGCTATCTGCGCTCAAGTTAGATTTCAACCAGCTCAAGGGCTTACCTGAGGCAATTGGGAAGCTTGAATGGTTGGAGGTTCTCACTTTGCACTATAATAGAGTTAAGAGGTTGCCTTCCACAGTGGGTAATCTACGCAATTTGAAGGAACTTGATGTTAGCTTTAATGAGCTCGAATTTGTACCAGAGAACCTGTGTTTTGCAACTAATTTGAAGAAATTAAACTTGGGGAAGAACTTTGCGGACCTAAGAGCCTTGCCAACATCAATTGGAAATCTTGAAATGCTTGAGGAGTTGGATATAAGTGATGATCAAATAAAATCTTTGCCAGAGTCTTTCAGGTTCTTGTCCAAGTTGAGAGTTTTTCGAGCTGATGAGACCCCCCTTGAGGTGCCACCCAGAGAATTGGTCAAGTTGGGTGCTCAGGAGGTTGTGCACTATATGGCTGATTTTGTCACCAAAAGGGACGCAAGAATTGTGCCATCAAAGAAAAAGAAGGGGTTCTGGTCCTGGTTTTGCTCCATATTTTGTTCAAAGCTTGAATGA 1548 0.4438 MAPMLESEKDPPQPPSRAFLDTVEEITTIYRSLPPRPSIEEVEAATSTVDTLNNDEQTKLHEISKQKPPHDVPEDLFSVLQQLKKTMVLFHTHQHRREALQLLELEKMFQTFADLIQRASELVSGDTQKQSLPTIPEELVVITDQSETLVKEEEESQKNDSQVIQRSLSTGGGSTEKLSLMKVATVIESCAGSGATTLELRGKLEDQMEWLPVSIGKLSGVTEMDLSENRIMALPTTIVGLKALTKLDLHSNQLINLPHSFGELVNLVDLDLHANRLKSLPATFGNLTNLIDLDLSSNGFTNLPETIGNLSSLKRLNAETNELEELPHTIGNCSSLSALKLDFNQLKGLPEAIGKLEWLEVLTLHYNRVKRLPSTVGNLRNLKELDVSFNELEFVPENLCFATNLKKLNLGKNFADLRALPTSIGNLEMLEELDISDDQIKSLPESFRFLSKLRVFRADETPLEVPPRELVKLGAQEVVHYMADFVTKRDARIVPSKKKKGFWSWFCSIFCSKLE 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04022 515 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 156 316 - -
Viun3g04022 515 SUPERFAMILY L domain-like 189 464 - -
Viun3g04022 515 SMART LRR_bac_2 264 283 - -
Viun3g04022 515 SMART LRR_bac_2 333 352 - -
Viun3g04022 515 SMART LRR_bac_2 241 260 - -
Viun3g04022 515 SMART LRR_bac_2 310 329 - -
Viun3g04022 515 SMART LRR_bac_2 427 446 - -
Viun3g04022 515 SMART LRR_bac_2 379 398 - -
Viun3g04022 515 SMART LRR_bac_2 287 306 - -
Viun3g04022 515 MobiDBLite consensus disorder prediction 150 171 - -
Viun3g04022 515 Gene3D Ribonuclease Inhibitor 174 490 IPR032675 -
Viun3g04022 515 Pfam Leucine rich repeat 266 323 IPR001611 GO:0005515
Viun3g04022 515 Pfam Leucine rich repeat 335 392 IPR001611 GO:0005515
Viun3g04022 515 SMART LRR_typ_2 287 309 IPR003591 -
Viun3g04022 515 SMART LRR_typ_2 310 333 IPR003591 -
Viun3g04022 515 SMART LRR_typ_2 379 402 IPR003591 -
Viun3g04022 515 SMART LRR_typ_2 218 240 IPR003591 -
Viun3g04022 515 SMART LRR_typ_2 241 263 IPR003591 -
Viun3g04022 515 SMART LRR_typ_2 427 449 IPR003591 -
Viun3g04022 515 SMART LRR_typ_2 356 378 IPR003591 -
Viun3g04022 515 SMART LRR_typ_2 264 286 IPR003591 -
Viun3g04022 515 FunFam Plant intracellular Ras-group-related LRR protein 4 177 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04022 Viun-Chr3 47815705 47817822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04022 290 464 Receptor kinase-like Gene Family AT3G11080 34.426 2.17e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04022 - - gmx:100798442 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04022 3 47815705 47817822 Viun3g04022 3 47815705 47817822 ECH